View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17739_low_15 (Length: 203)
Name: NF17739_low_15
Description: NF17739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17739_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 45927015 - 45926841
Alignment:
| Q |
17 |
atagatgaaagtgaagaaggagcaatctcactatccacaatattttcttcattttgcaactcatcaacggtccttgttggttcccttatcatccgctttg |
116 |
Q |
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| T |
45927015 |
atagatgaaagtgaagaaggagcaatctcactatccacaatattttcttcattttgcaactcatcaacggtccttgttggttcccttatcatccgctttg |
45926916 |
T |
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| Q |
117 |
ttctactggtactagccatgtttctgccacaccaaaaacacgatcaccaatgcaatgttaaagtttcttcttttc |
191 |
Q |
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| T |
45926915 |
ttctactggtactaaccatgtttctgccacaccaaaaacacgatcaccaatgcaatgttaaagtttcttcttttc |
45926841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 15805535 - 15805451
Alignment:
| Q |
29 |
gaagaaggagcaatctcactatccacaatattttcttcattttgcaactcatcaacggtccttgttggttcccttatcatccgctttg |
116 |
Q |
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| T |
15805535 |
gaagaaggaacaatctcactatccataatattttcttcatttggcaa---ttcaacagtccttgtaggtgcccttatcatcctctttg |
15805451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 15805367 - 15805327
Alignment:
| Q |
151 |
aaaacacgatcaccaatgcaatgttaaagtttcttcttttc |
191 |
Q |
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| T |
15805367 |
aaaacacgatcaccaatgcaagtttaaagtttcttcttttc |
15805327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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