View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17739_low_7 (Length: 342)
Name: NF17739_low_7
Description: NF17739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17739_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 44885455 - 44885142
Alignment:
| Q |
19 |
gtggaagttgaggttgtcattaaaaggaacaacaatgcctagcttggtcttgctcctgagccatgtaacagtgtttcggcaaacaggtaacaagataaga |
118 |
Q |
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| T |
44885455 |
gtggaagttgaggttgtcattaaaaggaacaacaatgcctagcttggtcttgctcctgagccatgtaacagtgtttcggcaaacaggtaacaagataaga |
44885356 |
T |
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| Q |
119 |
gccatgttcaatttgagtgtctcagctgcacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44885355 |
gccatgttcaatttgagtgtctcagctgcacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgt |
44885256 |
T |
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| Q |
219 |
aggcaaatagacctaacataactccaatccacaatactaatatccaatttctcttccaactgtccggcagaaagtagatggtatccatacaccgcttccc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44885255 |
aggcaaatagacctaacataactccaatccacaatactaatatccaatttctcttccaactgtccggcagaaagtagatggtatccatacaccgcttccc |
44885156 |
T |
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| Q |
319 |
aacaccgccttcat |
332 |
Q |
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|||||||||||||| |
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| T |
44885155 |
aacaccgccttcat |
44885142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 44898779 - 44898525
Alignment:
| Q |
23 |
aagttgaggttgtcattaaaaggaacaacaatgcctagcttggtcttgctcctgagccatgtaacagtgtttcggcaaacaggtaacaagataagagcca |
122 |
Q |
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|||| ||||||||||| |||||||||| |||||||||||||||||||| ||| ||||| || || |||||||||||||||||||| ||||||| |||| |
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| T |
44898779 |
aagtggaggttgtcatcaaaaggaacagcaatgcctagcttggtcttgtccctaagccaggttacggtgtttcggcaaacaggtaataagataatggcca |
44898680 |
T |
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| Q |
123 |
tgttcaatttgagtgtctcagctgcacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgtaggc |
222 |
Q |
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| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||||| |
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| T |
44898679 |
tattcaatttgagtgtctcagctgcacctttagccatacagacacaatggcccatcacttcatatgcagcttttcttctatactgcatgaatttgtaggc |
44898580 |
T |
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| Q |
223 |
aaatagacctaacataactccaatccacaatactaatatccaatttctcttccaa |
277 |
Q |
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||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||| |
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| T |
44898579 |
aaatagaccacacataacaccaatccacaatgctaatatccaaattctcttccaa |
44898525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 44914697 - 44914417
Alignment:
| Q |
19 |
gtggaagttgaggttgtcattaaaaggaacaacaatgcctagcttggtcttgctcctgagccatgtaacagtgtttcggcaaacaggtaacaagataaga |
118 |
Q |
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|
||||||||||||||| |||| |||||||||| |||||||||| ||||||||| |||| |||||||| | |||||||| ||||||||||||||||||| | |
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| T |
44914697 |
gtggaagttgaggttatcatcaaaaggaacagcaatgcctagtttggtcttgttcctaagccatgtgatggtgtttcgacaaacaggtaacaagataata |
44914598 |
T |
|
| Q |
119 |
gccatgttcaatttgagtgtctcagctgcacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||| ||||||||| ||||||| ||||||| |
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| T |
44914597 |
gccatgttcaatttgagtgtctcagctgcacctttagccatgcacacacaatgacccattacttcataagcatcttttcttctgtactgcatgaatttgt |
44914498 |
T |
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| Q |
219 |
aggcaaatagacctaacataactccaatccacaatactaatatccaatttctcttccaactgtccggcagaaagtagatgg |
299 |
Q |
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||||||||||||| ||||||| |||||||| | ||| ||||||||| |||| | |||| ||||| |||||||||| |||| |
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| T |
44914497 |
aggcaaatagaccacacataacaccaatccatagtaccaatatccaagttctttgccaattgtcctgcagaaagtaaatgg |
44914417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 35 - 251
Target Start/End: Complemental strand, 39982683 - 39982467
Alignment:
| Q |
35 |
tcattaaaaggaacaacaatgcctagcttggtcttgctcctgagccatgtaacagtgtttcggcaaacaggtaacaagataagagccatgttcaatttga |
134 |
Q |
| |
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|||| ||||||||||| | ||||||||||||||| |||||||||| || | ||||||||||||||||| || ||||||| |||||||||||||| | |
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| T |
39982683 |
tcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaatttaa |
39982584 |
T |
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| Q |
135 |
gtgtctcagctgcacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgtaggcaaatagacctaa |
234 |
Q |
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|||| ||||| || ||||| |||||||| ||||| || |||||||| | ||| |||| | |||| | ||| ||||||||||| |||||||||| ||||| |
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| T |
39982583 |
gtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcctaa |
39982484 |
T |
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| Q |
235 |
cataactccaatccaca |
251 |
Q |
| |
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||| || |||||||||| |
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| T |
39982483 |
catgacaccaatccaca |
39982467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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