View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17739_low_9 (Length: 305)

Name: NF17739_low_9
Description: NF17739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17739_low_9
NF17739_low_9
[»] chr8 (1 HSPs)
chr8 (12-305)||(41965979-41966273)
[»] scaffold0667 (1 HSPs)
scaffold0667 (12-259)||(5103-5351)
[»] chr2 (24 HSPs)
chr2 (12-237)||(8572758-8572987)
chr2 (12-276)||(10336444-10336703)
chr2 (143-264)||(9357801-9357922)
chr2 (13-112)||(14551111-14551210)
chr2 (12-109)||(10372676-10372774)
chr2 (12-109)||(9316816-9316917)
chr2 (12-112)||(9292719-9292820)
chr2 (13-105)||(9321789-9321882)
chr2 (12-85)||(10348622-10348695)
chr2 (12-83)||(9283431-9283502)
chr2 (12-131)||(9060355-9060478)
chr2 (12-85)||(7114902-7114975)
chr2 (12-116)||(10353932-10354037)
chr2 (11-93)||(9275333-9275416)
chr2 (18-85)||(9357935-9358002)
chr2 (12-85)||(9329418-9329491)
chr2 (21-84)||(8577689-8577752)
chr2 (201-258)||(17565557-17565614)
chr2 (12-84)||(7612716-7612788)
chr2 (12-84)||(9365415-9365487)
chr2 (217-305)||(10372441-10372529)
chr2 (12-84)||(12011850-12011922)
chr2 (217-259)||(7115114-7115156)
chr2 (12-84)||(8578782-8578854)
[»] chr1 (4 HSPs)
chr1 (12-168)||(29442616-29442770)
chr1 (12-186)||(29423934-29424106)
chr1 (12-162)||(29452608-29452756)
chr1 (12-162)||(29467082-29467230)
[»] chr4 (2 HSPs)
chr4 (12-116)||(26575666-26575771)
chr4 (40-93)||(561980-562034)
[»] chr3 (1 HSPs)
chr3 (12-111)||(37463314-37463414)
[»] chr5 (1 HSPs)
chr5 (12-83)||(36225571-36225642)


Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 41965979 - 41966273
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctca-aaaatccctcaatcgatccttaatccttcg 110  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41965979 gattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatcaaccttcacctcagaaaatccctcaatcgatccttaatccttcg 41966078  T
Q  111 actcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactcaatcatcctttcttgcgtcacagcaccaacatcact 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41966079 actcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactcaaccatcctttcttgcgtcacagcaccaacatcact 41966178  T
Q  211 cttctgggttcatgtaacggcctcctctacatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccc 305  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966179 cttctgggttcatgtaacggcctcctctgcatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccc 41966273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 5351 - 5103
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat-ccctcaatcgatccttaatccttcg 110  Q
    ||||||||||||| || |||||||||  |||| ||||| |||| |||||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||    
T  5351 gattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattccctcaatagatccttcatccttcg 5252  T
Q  111 actcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactcaatcatcctttcttgcgtcacagcaccaacatcact 210  Q
    |||||   |  || |||||||  |||| || |||||||| ||||| |||||||||||||||||||| || ||||||  |||| |||||||||||||  ||    
T  5251 actcagatccaatatctaccaaatcgaagatgatttctcaaacctcaccaccgccgttccactcaaccaccctttcacgcgtaacagcaccaacattgct 5152  T
Q  211 cttctgggttcatgtaacggcctcctctacatctccaatggcgaaatcg 259  Q
    ||| | |||||||||||||||||||||  | | ||||| ||||||||||    
T  5151 cttatcggttcatgtaacggcctcctcgccgtttccaacggcgaaatcg 5103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 8572758 - 8572987
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa-tccctcaatcgatccttaatccttcg 110  Q
    ||||||||||||| || |||||||||  |||  ||||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| ||||    
T  8572758 gattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcattcg 8572857  T
Q  111 actcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccg---ttccactcaatcatcctttcttgcgtcacagcaccaacatc 207  Q
    || ||||   ||| |||||||  ||||||| ||||||||| | |||||||||||||   |||||||||| ||||||||||   || |||||||||| ||     
T  8572858 acgcaactacgatatctaccaaatcgatgatgatttctctgatctaaccaccgccgagtttccactcaaccatcctttctccggtaacagcaccaaaatt 8572957  T
Q  208 actcttctgggttcatgtaacggcctcctc 237  Q
    |||||| | |||||||||||||||||||||    
T  8572958 actcttatcggttcatgtaacggcctcctc 8572987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 276
Target Start/End: Complemental strand, 10336703 - 10336444
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatccttcg 110  Q
    |||||||||||||||| |||||||||  |||||||||| |||| ||||| ||||||||||||||||| ||||| |||||||||     | | ||||| ||    
T  10336703 gattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttcaccttcaaaattccctcaattttaacctcatcctccg 10336604  T
Q  111 actcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactcaatcatcctttcttgcgtcacagcaccaacatcact 210  Q
     | ||| || || ||||||||  || ||      ||| |||||||||||||||| ||||||||||| ||||||||| | |  ||||||| ||||||| ||    
T  10336603 tcgcaaaaccgacctctaccacctccat------ttccctaacctaaccaccgctgttccactcaaccatcctttcatccaccacagcaacaacatcgct 10336510  T
Q  211 cttctgggttcatgtaacggcctcctctacatctccaatggcgaaatcgatttctctaacccttac 276  Q
    ||||| |||||||| || |||||||||  |||||||||||||||||||| |||| |||||||||||    
T  10336509 cttcttggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttac 10336444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 9357922 - 9357801
Alignment:
Q  143 atttctctaacctaaccaccgccgttccactcaatcatcctttcttgcgtcacagcaccaacatcactcttctgggttcatgtaacggcctcctctacat 242  Q
    ||||||| ||| | |||||||||||||||||||| || ||||||  |||| |||||||||||||  ||||| | |||||||||||||||||||||  |||    
T  9357922 atttctcaaacttcaccaccgccgttccactcaaccaccctttcacgcgtaacagcaccaacatttctcttatcggttcatgtaacggcctcctcgccat 9357823  T
Q  243 ctccaatggcgaaatcgatttc 264  Q
    ||||||||||||||||| ||||    
T  9357822 ctccaatggcgaaatcgctttc 9357801  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 14551210 - 14551111
Alignment:
Q  13 attccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaatccctcaatcgatccttaatccttcgac 112  Q
    |||||||||||| || |||||||||| |||| ||||| ||||||||||||||||||| |||||||| |||| ||||||||| | ||||||||||||||||    
T  14551210 attccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctaaaaattccctcaattgttccttaatccttcgac 14551111  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 10372774 - 10372676
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatccttc 109  Q
    ||||||||||||| || |||||| ||  ||| |||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  10372774 gattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttc 10372676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 9316917 - 9316816
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa----tccctcaatcgatccttaatcct 107  Q
    ||||||||||||| || |||||||||  ||| |||||  |||| |||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  9316917 gattccgatcaacttcaaaatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaatcct 9316818  T
Q  108 tc 109  Q
    ||    
T  9316817 tc 9316816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 9292820 - 9292719
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa-tccctcaatcgatccttaatccttcg 110  Q
    ||||||||||||  || |||||||||  |||| ||||| |||| |||| |||||  ||||||||||||||||| |||||||| |||||||||||||||||    
T  9292820 gattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcg 9292721  T
Q  111 ac 112  Q
    ||    
T  9292720 ac 9292719  T

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Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 9321882 - 9321789
Alignment:
Q  13 attccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa-tccctcaatcgatccttaatc 105  Q
    |||||||||||| || |||||||||  |||| ||||| |||| ||| |||||||||||||||| |||||||| ||||||| |||||||||||||    
T  9321882 attccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatc 9321789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 10348695 - 10348622
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat 85  Q
    |||||||||||||||| |||||||||  |||||||||| |||||| ||| ||||||||||||||||| ||||||    
T  10348695 gattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttcacctaaaaaat 10348622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 9283431 - 9283502
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaa 83  Q
    ||||||||||||| || ||||||||||||||| ||||  |||| ||||| ||||||||||||||||||||||    
T  9283431 gattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaa 9283502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 9060355 - 9060478
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat----ccctcaatcgatccttaatcct 107  Q
    ||||||||||||| || |||||||||  |||||||||| |||| ||||||||||  |||||| |||||||||||    ||||||||||||   |||||||    
T  9060355 gattccgatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaataatcccctcaatcgatttataatcct 9060454  T
Q  108 tcgactcaacactgatctctacca 131  Q
    ||||| |||  | |||||||||||    
T  9060455 tcgacacaaatccgatctctacca 9060478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 7114902 - 7114975
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat 85  Q
    ||||||||||||| || |||||||||  |||||||||| |||||||||| |||||||||||||| || ||||||    
T  7114902 gattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaat 7114975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 10354037 - 10353932
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctca-aaaatccctcaatcgatccttaatccttcg 110  Q
    ||||||||||||| || |||||| ||  |||| ||||| ||||| |||| ||||||||||||||||||| ||| |||| ||||| ||||||||| |||||    
T  10354037 gattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcccccaatcaatccttaattcttcg 10353938  T
Q  111 actcaa 116  Q
    | ||||    
T  10353937 attcaa 10353932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 9275416 - 9275333
Alignment:
Q  11 tgattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa-tccctcaat 93  Q
    ||||||||||||| ||| |||||||||  ||| || ||  ||||||||||||||||||||||||| |||||||| |||||||||    
T  9275416 tgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttcatctcaaaaattccctcaat 9275333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 9358002 - 9357935
Alignment:
Q  18 gatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat 85  Q
    ||||||| || |||||||||  |||||||||| |||| ||||||||||| ||||||||||||||||||    
T  9358002 gatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 9329491 - 9329418
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat 85  Q
    ||||||| ||||| || |||||||||  |||| ||||| |||||||||||||||  ||||||||||||||||||    
T  9329491 gattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 9329418  T

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Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 8577689 - 8577752
Alignment:
Q  21 caacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa 84  Q
    |||| ||||||||| || ||||||||||  |||||||||||||||||||| || ||||||||||    
T  8577689 caacttcgaaatcaatttgatccttaattgattcccacaacttcatcaacttttacctcaaaaa 8577752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 17565557 - 17565614
Alignment:
Q  201 caacatcactcttctgggttcatgtaacggcctcctctacatctccaatggcgaaatc 258  Q
    |||||| ||||||||||||||||||||||| |||||||  |||||||| ||| |||||    
T  17565557 caacattactcttctgggttcatgtaacggtctcctctgtatctccaacggcaaaatc 17565614  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 7612788 - 7612716
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa 84  Q
    ||||||||||||  || ||||| |||  |||||||||  |||||||||||||||  |||||||||||||||||    
T  7612788 gattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttcacctcaaaaa 7612716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 9365487 - 9365415
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa 84  Q
    |||||||||||||||| |||||||||  |||| ||||| |||| |||| ||||| |||||| || ||||||||    
T  9365487 gattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttcaccaacctccatctcaaaaa 9365415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 10372529 - 10372441
Alignment:
Q  217 ggttcatgtaacggcctcctctacatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccc 305  Q
    |||||||||||||||||||||  ||||| ||| ||| || ||| ||||  ||||||||  |||   |||||||||||||||||||||||    
T  10372529 ggttcatgtaacggcctcctcgccatctgcaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccc 10372441  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 12011850 - 12011922
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa 84  Q
    ||||||| ||||| || |||||||||  |||| ||||| |||| |||||||||| ||| ||||||||||||||    
T  12011850 gattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttcacctcaaaaa 12011922  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 7115114 - 7115156
Alignment:
Q  217 ggttcatgtaacggcctcctctacatctccaatggcgaaatcg 259  Q
    |||||||||||||||||||||  ||||||||||||| ||||||    
T  7115114 ggttcatgtaacggcctcctcgccatctccaatggccaaatcg 7115156  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 8578782 - 8578854
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaa 84  Q
    ||||||||||||  || ||||||||||||||||| ||  ||||||||| ||||| ||| | | ||||||||||    
T  8578782 gattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattacctcaaaaa 8578854  T

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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 29442616 - 29442770
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatccttcg 110  Q
    ||||||| ||||| ||||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| ||||| | ||||||||| ||||||||||||||    
T  29442616 gattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatccttcg 29442715  T
Q  111 actcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgtt 168  Q
    || ||||  |||| |||||||  ||   || |||||||||||||||||||||| ||||    
T  29442716 acacaactttgatttctaccaaatc---gaagatttctctaacctaaccaccggcgtt 29442770  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 29424106 - 29423934
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaatccct-caatcgatccttaatccttcg 110  Q
    ||||||| |||||||| |||||||||| |||  ||||| ||||||||| ||||||||| ||||||||| | ||| ||| |||||| ||||||||||||||    
T  29424106 gattccgttcaacctcaaaatcacttcaatctctaatcgattcccacagcttcatcaagcttcacctccataattccttcaatcgttccttaatccttcg 29424007  T
Q  111 actcaacactgatctctaccagttcgatgaggatttctctaacctaaccaccgccgttccactcaatcatcctttc 186  Q
    || |||| ||||| |||||||  ||    | ||||||||||||||||| |||||||||  |||||||| |||||||    
T  29424006 acacaactctgatttctaccaaatc---aacgatttctctaacctaactaccgccgttaaactcaatcctcctttc 29423934  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 29452608 - 29452756
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatccttcg 110  Q
    ||||||| |||||||| |||||||||| |||| ||||| |||| |||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||    
T  29452608 gattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaatccttcg 29452707  T
Q  111 actcaacactgatctctaccagttcgatgaggatttctctaacctaaccacc 162  Q
    || |||| ||| | |||||||  ||    | |||||||||||||||||||||    
T  29452708 acacaactctgttttctaccaaatc---aacgatttctctaacctaaccacc 29452756  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 29467082 - 29467230
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacct-caaaaatccctcaatcgatccttaatccttcg 110  Q
    ||||||| |||||||| |||||||||| |||| ||||| ||||||||||||||||||| |||||||| | ||| ||||||||||| | ||||||||||||    
T  29467082 gattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccgaaattccctcaatcgtttcttaatccttcg 29467181  T
Q  111 actcaacactgatctctaccagttcgatgaggatttctctaacctaaccacc 162  Q
    || |||| | ||| |||||||  ||    | |||||||||||||||||||||    
T  29467182 acacaactccgatttctaccaaatc---aacgatttctctaacctaaccacc 29467230  T

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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 26575771 - 26575666
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctca-aaaatccctcaatcgatccttaatccttcg 110  Q
    ||||||||||||| || |||||||||  || ||||||| ||||| |||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||    
T  26575771 gattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattcccccaatcgatccttaatccttcg 26575672  T
Q  111 actcaa 116  Q
    | ||||    
T  26575671 attcaa 26575666  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 562034 - 561980
Alignment:
Q  40 atccttaatcaattcccacaacttcatcaaccttcacctcaaaaa-tccctcaat 93  Q
    |||| ||||| |||||||||||||||  ||||||||||||||||| |||||||||    
T  562034 atccataatcgattcccacaacttcactaaccttcacctcaaaaactccctcaat 561980  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 37463414 - 37463314
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaaat-ccctcaatcgatccttaatccttcg 110  Q
    ||||||||||||| || |||||||||  ||| |||||| |||| |||||||||||||||||||| ||||||||| ||||||||| |||| ||||| ||||    
T  37463414 gattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatcattcg 37463315  T
Q  111 a 111  Q
    |    
T  37463314 a 37463314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 36225642 - 36225571
Alignment:
Q  12 gattccgatcaacctcgaaatcacttcgatccttaatcaattcccacaacttcatcaaccttcacctcaaaa 83  Q
    ||||||||||||| || |||||||||  ||| |||||| |||| ||||||||||  || |||||||||||||    
T  36225642 gattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttcacctcaaaa 36225571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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