View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_1 (Length: 989)
Name: NF1773_high_1
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 827; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 827; E-Value: 0
Query Start/End: Original strand, 13 - 908
Target Start/End: Original strand, 43051005 - 43051913
Alignment:
| Q |
13 |
aatatatatcttagcaaaaatagatttctttcaagtatgcaagagttagaaagaatggtgca-------catcattcttcattttaggtaacaagcaaaa |
105 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
43051005 |
aatatacatcttagcaaaaatagatttctttcaagtatgcaagagttagaaagaatggtgaatggtgcgcatcattcttcattttaggtaacaagcaaaa |
43051104 |
T |
|
| Q |
106 |
tacatatatttttct-ttattattgagtaatagtcatgttgatgatctataatctatttcgggagagagataagaataggaatagtaaatagagagagta |
204 |
Q |
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|||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43051105 |
tacacatatttttttattattattgagtaatagtcatgttgatgatctataatctatttcgggagagagataagaataggaatagtaaatagagagagta |
43051204 |
T |
|
| Q |
205 |
gttagttgagtcctaaaatgaaggagaaggtaaatgagtggcaacaattgaatggaggtaaagcgtgcatcatcactcacccatcatccaattccattcc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43051205 |
gttagttgagtcctaaaatgaaggagaaggtaaatgagtggcaacaattgaatggaggtaaagcgtgcatcatcactcacccatcatccaattccattcc |
43051304 |
T |
|
| Q |
305 |
aacccttatttaaaaacaatatttgaaggtcacaatca-----cattacattacaacaacactaaacaacaagaagaaaaaaggaacaaattttgaagga |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43051305 |
aacccttatttaaaaacaatatttgaaggtcacaatcatattacattacattacaacaacactacacaacaagaagaaaaaaggaacaaattttgaagga |
43051404 |
T |
|
| Q |
400 |
caaaatgtcgtggcaaacttacgttgatgaacatttgatgtgtgatattgatggcaccggacatcacctatctgccgctgccatcattggccatgatggc |
499 |
Q |
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| T |
43051405 |
caaaatgtcgtggcaaacttacgttgatgaacatttgatgtgtgatattgatggcaccggacaccacctatctgccgctgccatcattggccatgatggc |
43051504 |
T |
|
| Q |
500 |
tctgtttgggctcagagctcttccttccctcaggtatattcatcattacattcccacatgaaactattcttggtcattcattgcgtatttgaagattaga |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43051505 |
tctgtttgggctcagagctcttccttccctcaggtatattcatcattacattcccacatgaaactattcttggtcattcattgcgtatttgaagattaga |
43051604 |
T |
|
| Q |
600 |
ttttgattaggaggtgcacatattactattatgatcaagtgaaattgctctaatcaatttttatttatgattatttttcagattaagcctcaagagaaca |
699 |
Q |
| |
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| T |
43051605 |
ttttgattaggaggtgcacatattactattatgatcaagtgaaattgctctaatcaatttttatttatgattatttttcagattaagcctcaagagaaca |
43051704 |
T |
|
| Q |
700 |
ctgatattatgaaagattttgacgaacctggtcatcttgctcctacgggcttgcaccttgcaggagtcaaatacatggtcatccaaggagagtctggtgc |
799 |
Q |
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| T |
43051705 |
ctgatattatgaaagattttgacgaacctggtcatcttgctcctacgggcttgcaccttgcaggagtcaaatacatggtcatccaaggagagtctggtgc |
43051804 |
T |
|
| Q |
800 |
tgtcatccgtgggaagaaggtaaattattcaatttcgcacacaaatttctagtattcatattattgaggttgtatttaagtctcatgttgtcaatatttt |
899 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43051805 |
tgtcatccgtgggaagaaggtaaattattcaatttcgcacacaaatttctagtattcatattattgaggttgtatttaagtctcatgttgccaatatttt |
43051904 |
T |
|
| Q |
900 |
cgagttgtt |
908 |
Q |
| |
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||||||||| |
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| T |
43051905 |
cgagttgtt |
43051913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 926 - 971
Target Start/End: Original strand, 43051903 - 43051948
Alignment:
| Q |
926 |
ttcgagttgtttcagaatgatattcaagtccatttaacatggtatc |
971 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43051903 |
ttcgagttgtttcagaatgatattcaagaccatttaacatggtatc |
43051948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 8e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 399 - 535
Target Start/End: Complemental strand, 34173974 - 34173838
Alignment:
| Q |
399 |
acaaaatgtcgtggcaaacttacgttgatgaacatttgatgtgtgatattgatggcaccggacatcacctatctgccgctgccatcattggccatgatgg |
498 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| || |||||||| | || |||||||| | |||||||| || |
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| T |
34173974 |
acaaaatgtcgtggcaaacttatgtggatgaacatttgatgtgtgatatcgatggcactggtcatcacctcaccgcggctgccattctcggccatgacgg |
34173875 |
T |
|
| Q |
499 |
ctctgtttgggctcagagctcttccttccctcaggta |
535 |
Q |
| |
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|||||||||||||||||| |||| |||||||||||| |
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| T |
34173874 |
ttctgtttgggctcagagcacttcattccctcaggta |
34173838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 673 - 822
Target Start/End: Complemental strand, 34173209 - 34173060
Alignment:
| Q |
673 |
tttttcagattaagcctcaagagaacactgatattatgaaagattttgacgaacctggtcatcttgctcctacgggcttgcaccttgcaggagtcaaata |
772 |
Q |
| |
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|||| ||| |||||||| | |||| |||| ||| ||||||||||| |||||||| || |||||||| ||||| ||| ||||||||| | | |||| || |
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| T |
34173209 |
ttttacagtttaagcctgatgagattactggtatcatgaaagatttcgacgaaccaggacatcttgcacctactggcatgcaccttggggaaatcaagta |
34173110 |
T |
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| Q |
773 |
catggtcatccaaggagagtctggtgctgtcatccgtgggaagaaggtaa |
822 |
Q |
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|||||| || ||||||||| |||| |||||||| |||||||||||||||| |
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| T |
34173109 |
catggttattcaaggagagcctggagctgtcattcgtgggaagaaggtaa |
34173060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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