View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_10 (Length: 679)
Name: NF1773_high_10
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-135; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 98 - 346
Target Start/End: Complemental strand, 2756976 - 2756728
Alignment:
| Q |
98 |
gtaacacaactgcaacatgggtcatggtggaggagaagctgaagaaggaagagatttgcaatttacacctacatgggttgttgctcttgtttgcactgtc |
197 |
Q |
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| T |
2756976 |
gtaacacaactgcaacatgggtcatggtggaggagaagctgaagaaggaagagatttgcaatttacacctacatgggttgttgctcttgtttgcactgtc |
2756877 |
T |
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| Q |
198 |
atcgtcgctgtttcattcgcggtggaacgttctcttcattatcttggcaaggttcttaagaagaaaaatcagaaaccactctttgaagccttacaaaaaa |
297 |
Q |
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| T |
2756876 |
atcgtcgctgtttcattcgcggtggaacgttctcttcattatcttggcaaggttcttaagaagaaaaatcagaaaccactctttgaagccttacaaaaaa |
2756777 |
T |
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| Q |
298 |
tcaaagaaggtttttccttgttttctttgttattgttataattatgata |
346 |
Q |
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| T |
2756776 |
tcaaagaaggtttttccttgttttctttgttactgttataattatgata |
2756728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 442 - 679
Target Start/End: Complemental strand, 2756632 - 2756395
Alignment:
| Q |
442 |
cactgtttctaacggtaacacaaaatgggatgataaaaatttgtgttccggtagaatggactattcatatgcttccttgtagtattaatggggacgatga |
541 |
Q |
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| T |
2756632 |
cactgtttctaacggtaacacaaaatgggatgataaaaatttgtgttccggtagaatggactattcatatgcttccttgtagtattaatggggacgatga |
2756533 |
T |
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| Q |
542 |
agtcaaagaaacaaaattaccatccaagtcacattttcagacttttttctcttccaaggatgtttttggcactgctaggcgccttctaggtgacgatcac |
641 |
Q |
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| T |
2756532 |
agtcaaagaaacaaaattaccatccaagtcacattttcagacttttttctcttccaaggatgtttttggcactgctaagcgccttctaggtgacgatcac |
2756433 |
T |
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| Q |
642 |
gatcattcgtccaaagatgaagaaattggatactgtac |
679 |
Q |
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| T |
2756432 |
gatcattcgtccaaagatgaagaaattggatactgtac |
2756395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 66 - 309
Target Start/End: Complemental strand, 2748944 - 2748700
Alignment:
| Q |
66 |
agtaagttaacgttgttcaaatcaaacattgtgtaacacaactgcaacatgggtcatggtggaggagaagctgaagaaggaagagatttgcaatttacac |
165 |
Q |
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| T |
2748944 |
agtaagttaatattgttcaaatcaaacactgtttaacacagttacaacatgggtcatggtggaggacaagttgaagaaggacccgatttgcaatatgctc |
2748845 |
T |
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| Q |
166 |
ctacatgggttgttgctcttgtttgcactgtcatc-gtcgctgtttcattcgcggtggaacgttctcttcattatcttggcaaggttcttaagaagaaaa |
264 |
Q |
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| T |
2748844 |
ctacatggattgttgcccttgtttgcagcgtcatcggtcgcagtttcattcgccgctgaatgttctcttcattgtcttggcaactttcttaagaagaaaa |
2748745 |
T |
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| Q |
265 |
atcagaaaccactctttgaagccttacaaaaaatcaaagaaggtt |
309 |
Q |
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| T |
2748744 |
accaaaaaccactttatcaagccctacagaaaattaaagaaggtt |
2748700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2757034 - 2756974
Alignment:
| Q |
1 |
cagtagttgttgttttttatgtcccatgtcacagttgtaacataaaacacaacaaagagta |
61 |
Q |
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| T |
2757034 |
cagtagttgttgttttttatgtcccatgttgcagttgtaacataaaacacaacaaagagta |
2756974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 457 - 524
Target Start/End: Complemental strand, 2748560 - 2748493
Alignment:
| Q |
457 |
taacacaaaatgggatgataaaaatttgtgttccggtagaatggactattcatatgcttccttgtagt |
524 |
Q |
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| T |
2748560 |
taacacaaaatgggataacaaaaatttgtgttcctgatgagtggacttatcatatgcttccttgtagt |
2748493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 633
Target Start/End: Complemental strand, 2748456 - 2748393
Alignment:
| Q |
570 |
tcacattttcagacttttttctcttccaaggatgtttttggcactgctaggcgccttctaggtg |
633 |
Q |
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| T |
2748456 |
tcacattttcagacttttttctcttcggatcttgtttctggcactgctcggcgccttcttggtg |
2748393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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