View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_101 (Length: 322)
Name: NF1773_high_101
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_101 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 90549 - 90245
Alignment:
| Q |
1 |
tcaatattctttgtcgtgtctttttattatcatggacaatctgaatccatagaagnnnnnnnncataacatgtttcaaattaccaaaagttgtccacaat |
100 |
Q |
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| T |
90549 |
tcaatattctttgccgtgtctttttattatcatggacaatctgaatccatagaagaaaaaaaacataacctgtttcaaattaccaaaagttgtccacatt |
90450 |
T |
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| Q |
101 |
gcttccttttggctcactcttaatgactcatttctagtgtcatataacattgggaattcatacaaagaatgatgcaactatgcaccaacttcctaacaat |
200 |
Q |
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| T |
90449 |
gcttccttttggctcactcttaatgactcatttctagtgtcatataacattgggaattcatacaaa-aatgatgcaactatgcaccaacttcctaacaat |
90351 |
T |
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| Q |
201 |
caactacatgaatgccgaataggtagatacaaaattacattaaaaattgaaactaacaaagcttagatccgttcttgttgcctattgaaatggaagctga |
300 |
Q |
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| T |
90350 |
caactacatgaatgccgaataggtagatacaaaattacattaaaaattgaaactaacaaagcttagatccgttcttgttgcctattgaaatggaagctga |
90251 |
T |
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| Q |
301 |
gtattg |
306 |
Q |
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|||||| |
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| T |
90250 |
gtattg |
90245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 98031 - 97984
Alignment:
| Q |
166 |
agaatgatgcaactatgcaccaacttcctaacaatcaactacatgaat |
213 |
Q |
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| T |
98031 |
agaatgatgcaactatgcaccaatttcctaacaatcaactacatgaat |
97984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 40875734 - 40876038
Alignment:
| Q |
1 |
tcaatattctttgtcgtgtctttttattatcatggacaatctgaatccatagaagnnnnnnnncataacatgtttcaaattaccaaaagttgtccacaat |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | |
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| T |
40875734 |
tcaatattctttgccgtgtctttttattatcatggacaatctgaatccatagaagaaaaaaaacataacctgtttcaaattaccaaaagttgtccacatt |
40875833 |
T |
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| Q |
101 |
gcttccttttggctcactcttaatgactcatttctagtgtcatataacattgggaattcatacaaagaatgatgcaactatgcaccaacttcctaacaat |
200 |
Q |
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| T |
40875834 |
gcttccttttggctcactcttaatgactcatttctagtgtcatataacattgggaattcatacaaa-aatgatgcaactatgcaccaacttcctaacaat |
40875932 |
T |
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| Q |
201 |
caactacatgaatgccgaataggtagatacaaaattacattaaaaattgaaactaacaaagcttagatccgttcttgttgcctattgaaatggaagctga |
300 |
Q |
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| T |
40875933 |
caactacatgaatgccgaataggtagatacaaaattacattaaaaattgaaactaacaaagcttagatccgttcttgttgcctattgaaatggaagctga |
40876032 |
T |
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| Q |
301 |
gtattg |
306 |
Q |
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|||||| |
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| T |
40876033 |
gtattg |
40876038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 40868251 - 40868298
Alignment:
| Q |
166 |
agaatgatgcaactatgcaccaacttcctaacaatcaactacatgaat |
213 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40868251 |
agaatgatgcaactatgcaccaatttcctaacaatcaactacatgaat |
40868298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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