View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_103 (Length: 322)
Name: NF1773_high_103
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_103 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 39704696 - 39704408
Alignment:
| Q |
18 |
tattccaaccaaacacagataacattcatcataacatcataacctcgtaaacattttcatacttgtaagaaatagagcacagtaagtaatacacaaagtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39704696 |
tattccaaccaaacacagataacattcatcataacatcataacctcttaaacattttcatacttgtaagaaatagagcacagtaagtaatacacaaagtt |
39704597 |
T |
|
| Q |
118 |
gatagctccaaacacgaccaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaatt |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39704596 |
gatagctccaaacatgaccaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaatt |
39704497 |
T |
|
| Q |
218 |
aaagcagtgctcaaataaaaagcaattcctataagcattgaaatcattgctgttgatgtgctcttaagtgattgtggaaattgttgata |
306 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
39704496 |
aaagcagtgctcaaataaaaagcaatacctataagcattgaaatcattgcagttgatgtgatcttaagtgattgtggaaattgttgata |
39704408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 65 - 309
Target Start/End: Complemental strand, 39695740 - 39695496
Alignment:
| Q |
65 |
taaacattttcatacttgtaagaaatagagcacagtaagtaatacacaaagttgatagctccaaacacgaccaacatccaatacacattatcaaccttgc |
164 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
39695740 |
taaacattttcatacttgtaagaaatagagcacaataggtaatacacaaagttgatacctccaaacactactaacatccaatacacattatcaaccttgc |
39695641 |
T |
|
| Q |
165 |
catgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagcaattcctataagcattgaaatcat |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39695640 |
catgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagcaattcctataagcattgaaatcat |
39695541 |
T |
|
| Q |
265 |
tgctgttgatgtgctcttaagtgattgtggaaattgttgatagta |
309 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
39695540 |
tgctgttgatgtgttcttaagtgattgtggaaattgttggtagta |
39695496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 73 - 306
Target Start/End: Original strand, 39934381 - 39934614
Alignment:
| Q |
73 |
ttcatacttgtaagaaatagagcacagtaagtaatacacaaagttgatagctccaaacacgaccaacatccaatacacattatcaaccttgccatgattt |
172 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39934381 |
ttcatatttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaaccttgccatgattt |
39934480 |
T |
|
| Q |
173 |
atttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagcaattcctataagcattgaaatcattgctgttg |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
39934481 |
atttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttg |
39934580 |
T |
|
| Q |
273 |
atgtgctcttaagtgattgtggaaattgttgata |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
39934581 |
atgtgctcttaagtgattgtggaaattgttgata |
39934614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 35 - 306
Target Start/End: Original strand, 39928696 - 39928967
Alignment:
| Q |
35 |
gataacattcatcataacatcataacctcgtaaacattttcatacttgtaagaaatagagcacagtaagtaatacacaaagttgatagctccaaacacga |
134 |
Q |
| |
|
||||||||| |||||||||||| | |||| |||||||||||||||||||||| | ||| || | |||||||||||||||||| ||| | || | | || |
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|
| T |
39928696 |
gataacatttatcataacatcacatcctcttaaacattttcatacttgtaaggagaagaacaaaataagtaatacacaaagtttatacccccgagtagga |
39928795 |
T |
|
| Q |
135 |
ccaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaata |
234 |
Q |
| |
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| |||||||| |||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| || |
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| T |
39928796 |
ctaacatccagtacacattgtcaatcttcccatgatttatgtcatcaggtaaccaatcagtactcctacgaacttgatcaattaatgcattgctcatgta |
39928895 |
T |
|
| Q |
235 |
aaaagcaattcctataagcattgaaatcattgctgttgatgtgctcttaagtgattgtggaaattgttgata |
306 |
Q |
| |
|
|||||||| |||||||||||||||| | |||| |||||||||||||| || |||||||||||||||||||| |
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| T |
39928896 |
aaaagcaacccctataagcattgaaaccgttgcagttgatgtgctctttagcgattgtggaaattgttgata |
39928967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 38058936 - 38059047
Alignment:
| Q |
35 |
gataacattcatcataacatcataacctcgtaaacattttcatacttgtaagaaatagagcacagtaagtaatacacaaagttgatagctccaaacacga |
134 |
Q |
| |
|
||||||||| |||||||||| | | |||| || |||||||||||||||||| | ||| || | |||||||||| |||||||||| | ||||| || | |
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| T |
38058936 |
gataacatttatcataacattacatcctcttacacattttcatacttgtaaacagaagaacaaaataagtaatacctaaagttgatacccccaaatacaa |
38059035 |
T |
|
| Q |
135 |
ccaacatccaat |
146 |
Q |
| |
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|||||||||||| |
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| T |
38059036 |
ccaacatccaat |
38059047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 38059050 - 38059126
Alignment:
| Q |
164 |
ccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagc |
240 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||| ||||| | | |||||||| ||||| ||||||||| | |||||| |
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|
| T |
38059050 |
ccatgatttatgtcatctggtaaccaattagtaatcctatggatttggtcaactaaagtagtgctcaagttaaaagc |
38059126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 38061607 - 38061644
Alignment:
| Q |
269 |
gttgatgtgctcttaagtgattgtggaaattgttgata |
306 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
38061607 |
gttgatgtgctcttcagtgactgtggaaattgttgata |
38061644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 4847209 - 4847157
Alignment:
| Q |
250 |
aagcattgaaatcattgctgttgatgtgctcttaagtgattgtggaaattgtt |
302 |
Q |
| |
|
||||||||||||||||| |||||||||||| || | ||||||||||||||| |
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|
| T |
4847209 |
aagcattgaaatcattggagttgatgtgctcaaaaattattgtggaaattgtt |
4847157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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