View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_109 (Length: 311)
Name: NF1773_high_109
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_109 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 7950186 - 7949889
Alignment:
| Q |
1 |
ccctcaagctaactcactatctcagctgcttttatcaataccataaatgtcatatggttctctagaaacaacttcaaattcaacaatgtcaaaccaaatt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7950186 |
ccctcaagctaactcactatctcaactgcttttatcaataccataaatgtcatatggttctctagaaacaacttcaaattcaacaatgtcaaaccaaatt |
7950087 |
T |
|
| Q |
101 |
tagttgcagctaaaaacatgatcattgcaagtgtgaacctatctggtaaccttatatctgcagtaactagcccaacaatcagagactttgtggttttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7950086 |
tagttgcagctaaaaacatgatcattgcaagtgtgaacctatctggtaaccttatatctgcagtaactagcccagcaatcagagactttgtggttttgaa |
7949987 |
T |
|
| Q |
201 |
agctttcagaattgaaactcacactcctaatgctccaaaaattgtggaggttctctggcaccctcctattcataattggattaaatgcaacactgatg |
298 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7949986 |
agctttcagaattgaaactcacattcctaatgctccaaaaattgtggaggatctctggcaccctcctattcataattggattaaatgcaacactgatg |
7949889 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 24540739 - 24540811
Alignment:
| Q |
226 |
cctaatgctccaaaaattgtggaggttctctggcaccctcctattcataattggattaaatgcaacactgatg |
298 |
Q |
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|||||||||||||||||| | || ||| ||||||||||||| ||| | |||||||| ||||| || ||||||| |
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| T |
24540739 |
cctaatgctccaaaaattatagaagttatctggcaccctcccattaaaaattggatcaaatgtaatactgatg |
24540811 |
T |
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