View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_high_118 (Length: 292)
Name: NF1773_high_118
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_118 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 39750156 - 39750341
Alignment:
| Q |
13 |
aaaatcattccacttttgtaagtgccttttaaaattagtagttttacactgatagaattagaaatgaaagtttacctaacaataatactcaaagcaccta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39750156 |
aaaatcattccacttttgtaagtgccttttaaaattagtagttttacactgatagaattagaaatgaaagtttacctaacaataatactcaaagcaccta |
39750255 |
T |
|
| Q |
113 |
atggagtgacaagcacagcaggggcgtacatgtatgctacaaaattagctatctctccaacaatcactgttacataatcaccaagt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39750256 |
atggagtgacaagcacagcaggggcgtacatgtatgctacaaaattagctatctctccaacaatcactgttacaaaatcaccaagt |
39750341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 44564047 - 44564144
Alignment:
| Q |
84 |
ttacctaacaataatactcaaagcacctaatggagtgacaagcacagcaggggcgtacatgtatgctacaaaattagctatctctccaacaatcactg |
181 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||||| ||||| || || || || || ||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
44564047 |
ttacctaacgataatactcaaagcaccaagtggagtaacaagaaccgccggcgcataaatgtatgctacaaaattcgcaatttctccaacaatcactg |
44564144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University