View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_12 (Length: 656)
Name: NF1773_high_12
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 1 - 642
Target Start/End: Complemental strand, 35191698 - 35191057
Alignment:
| Q |
1 |
cataaacatatgccaaaactatatacatcacatttcctgttataggggttgccatttaaaacctgtaaaccatcattcacccatttatcaaataagttac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35191698 |
cataaacatatgccaaaactatatacatcacatttcctgttataggggttgccatttaaaacctgtaaaccatcattcacccatttatcaaataagttaa |
35191599 |
T |
|
| Q |
101 |
aagtcaattgcttagactttctttttgatcaaatgaaagcccttttgtgacctttttcttttcatattggcacaatattttatggtaaaggtttcaaggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
35191598 |
aagtcaattgcttagactttctttttgatcaaatgaaagcccttttgtgacctttttcttttcatatcggcacaatattttatgttaaaggtttcaaggg |
35191499 |
T |
|
| Q |
201 |
aaactgactacaaacctcaggagccatgtaaccaagtgtaccagtctccccggtcatgtcattaggattcgacgcttcaatacgtgcaacgccaaaatca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35191498 |
aaactgactacaaacctcaggagccatgtaaccaagtgtaccagtctccccggtcatgtcatttggattcgacgcttcaatacgtgcaacgccaaaatca |
35191399 |
T |
|
| Q |
301 |
gcaattttaacggtgcgagacttatccaacagcatgttctctgtctttacatctctgtggacaatcttctgagagtgaagatagttcagactgcatatcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35191398 |
gcaattttaacggtgcgagacttatccaacagcatgttctctgtctttacatctctgtggacaatcttctgagagtgaagatagttcagactgcatatcc |
35191299 |
T |
|
| Q |
401 |
aagtgaattctatttgagcgatcgaaacatattatgagtcggtctttattctcgacaagtactaaatcactattacattgagtgaaaaattcaggaaaag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
35191298 |
aagtgaattctatttgagcgatcgaaacatgttatgagtcggtctttattctcgacaagtactaaatcactattacattgagtaaaaaattcaggaaaag |
35191199 |
T |
|
| Q |
501 |
aaaaggaagatgaataccctcttgccatatcaagtgccagctggatgacaaccttaaaagctaacttcctcctcctatttttgattaagaatgatttcag |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35191198 |
aaaaggaagatgaataccctcttgccatatcaagtgccagctggatgacaaccttaaaagctaacttcctcctcctatttttgattaagaatgatttcaa |
35191099 |
T |
|
| Q |
601 |
tgcacctccaggaagatactcaacaaccacacagcagatatt |
642 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
35191098 |
tgcacctccaggaagatactcaacaaccacacagcagatatt |
35191057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 6e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 207 - 383
Target Start/End: Complemental strand, 43974425 - 43974249
Alignment:
| Q |
207 |
actacaaacctcaggagccatgtaaccaagtgtaccagtctccccggtcatgtcattaggattcgacgcttcaatacgtgcaacgccaaaatcagcaatt |
306 |
Q |
| |
|
|||||| ||||| |||||||| |||||||| || || |||||||||||||| ||||||||||| ||||| || | |||||||| ||||||||||||||| |
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| T |
43974425 |
actacacacctctggagccatataaccaagggttccggtctccccggtcatatcattaggatttgacgcctcgactcgtgcaaccccaaaatcagcaatt |
43974326 |
T |
|
| Q |
307 |
ttaacggtgcgagacttatccaacagcatgttctctgtctttacatctctgtggacaatcttctgagagtgaagata |
383 |
Q |
| |
|
||||| ||||| | |||||||| ||||||||| || ||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
43974325 |
ttaactgtgcgggtcttatccagcagcatgttttcggtcttcacatctctgtgaacaatcttctgagagtgaagata |
43974249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 515 - 642
Target Start/End: Complemental strand, 43974159 - 43974032
Alignment:
| Q |
515 |
taccctcttgccatatcaagtgccagctggatgacaaccttaaaagctaacttcctcctcctatttttgattaagaatgatttcagtgcacctccaggaa |
614 |
Q |
| |
|
||||||||||| | |||||| ||||||| |||||||||||||||||||| ||||||||||| || || |||| | |||||||||||| |||||||| || |
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|
| T |
43974159 |
taccctcttgctaaatcaagcaccagctgtatgacaaccttaaaagctaatttcctcctcctgttctttattaggtatgatttcagtgtacctccagcaa |
43974060 |
T |
|
| Q |
615 |
gatactcaacaaccacacagcagatatt |
642 |
Q |
| |
|
||||||| ||||| ||||| |||||||| |
|
|
| T |
43974059 |
gatactccacaacaacacaacagatatt |
43974032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 43975105 - 43975038
Alignment:
| Q |
1 |
cataaacatatgccaaaactatatacatcacatttcctgttataggggttgccatttaaaacctgtaa |
68 |
Q |
| |
|
|||||||| || |||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43975105 |
cataaacagataccaaaactgtacacatcacatttcctgttataggggtttccatttaaaacctgtaa |
43975038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 214 - 370
Target Start/End: Complemental strand, 1666568 - 1666412
Alignment:
| Q |
214 |
acctcaggagccatgtaaccaagtgtaccagtctccccggtcatgtcattaggattcgacgcttcaatacgtgcaacgccaaaatcagcaattttaacgg |
313 |
Q |
| |
|
||||||||||||||||||||||| || ||||| || || |||||||||| ||||||||| ||||| ||||| || || ||||||||||| ||||| | | |
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|
| T |
1666568 |
acctcaggagccatgtaaccaagggttccagtttcaccagtcatgtcatgaggattcgaagcttcgatacgagctacaccaaaatcagcgattttcaacg |
1666469 |
T |
|
| Q |
314 |
tgcgagacttatccaacagcatgttctctgtctttacatctctgtggacaatcttct |
370 |
Q |
| |
|
| || | ||| || | |||||||| ||||| || |||||||||||||||||||||| |
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|
| T |
1666468 |
ttcgtgtcttgtctagaagcatgttttctgttttaacatctctgtggacaatcttct |
1666412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 302
Target Start/End: Complemental strand, 985460 - 985372
Alignment:
| Q |
214 |
acctcaggagccatgtaaccaagtgtaccagtctccccggtcatgtcattaggattcgacgcttcaatacgtgcaacgccaaaatcagc |
302 |
Q |
| |
|
|||||||||||||| || ||||| || ||||| || || ||||||||| | |||||| | ||||||| || ||||| ||||||||||| |
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| T |
985460 |
acctcaggagccatatatccaagggttccagtttcaccagtcatgtcacttggattcaaagcttcaacccgagcaactccaaaatcagc |
985372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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