View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_122 (Length: 281)
Name: NF1773_high_122
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_122 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 47717677 - 47717926
Alignment:
| Q |
14 |
agaaggaatagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctaaaatagcacgctc |
113 |
Q |
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| T |
47717677 |
agaaggaatagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctgaaatagcacgctc |
47717776 |
T |
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| Q |
114 |
taaacaatcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaactta |
213 |
Q |
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| T |
47717777 |
taaacaatcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaactta |
47717876 |
T |
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| Q |
214 |
cgacgagaatcacttgatgctgctatttctttgagtttcctcatcaagtt |
263 |
Q |
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| T |
47717877 |
cgacgagaatcacttgatgctgctatttctttgagtttcctcatcaagtt |
47717926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 47745466 - 47745715
Alignment:
| Q |
14 |
agaaggaatagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctaaaatagcacgctc |
113 |
Q |
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| T |
47745466 |
agaaggaatatatttcatatctaatattacaacttagtttgagaactctaccaccaatcttgttataaaaaaaacttggagtttctgaaatagcacgctc |
47745565 |
T |
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| Q |
114 |
taaacaatcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaactta |
213 |
Q |
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| T |
47745566 |
taaacaatcattgcaatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaaagttgcattagcggtagcaaactta |
47745665 |
T |
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| Q |
214 |
cgacgagaatcacttgatgctgctatttctttgagtttcctcatcaagtt |
263 |
Q |
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| T |
47745666 |
cgacgagaatcacctgatgcagctatttcattgagtttcctcatcaagtt |
47745715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 6 - 264
Target Start/End: Original strand, 47712866 - 47713133
Alignment:
| Q |
6 |
aggagcagagaaggaatagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctaaaata |
105 |
Q |
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|||| |||||||| ||||| ||||| ||||||||| ||||||||||||| |||| ||| |||| |||||||| | | ||||| ||||||||| | ||| |
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| T |
47712866 |
aggatcagagaagcgatagacttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatata |
47712965 |
T |
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| Q |
106 |
gcacgctctaaacaatcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaa---------agttgcat |
196 |
Q |
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| T |
47712966 |
gcaaactctaaacaatcattgcaatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcat |
47713065 |
T |
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| Q |
197 |
tagcggtagcaaacttacgacgagaatcacttgatgctgctatttctttgagtttcctcatcaagttt |
264 |
Q |
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| T |
47713066 |
tatccgcagcaaacttaagacgagaatcacttgatgcagctatttctctcagtttcctcatcaagttt |
47713133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 26 - 263
Target Start/End: Original strand, 47759801 - 47760047
Alignment:
| Q |
26 |
tttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctaaaatagcacgctctaaacaatcatt |
125 |
Q |
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|||||| ||| ||||| |||||||||||||||||| |||| |||| |||||||||| || || | ||||| ||| | ||||||| |||||||||| ||| |
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| T |
47759801 |
tttcatatctgatattacaacttggtttgagaactctaccaccaatcttgttattacaacaacttggaatatctgagatagcaccatctaaacaattatt |
47759900 |
T |
|
| Q |
126 |
gcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaa---------agttgcattagcggtagcaaacttacga |
216 |
Q |
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| T |
47759901 |
gcaatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaaatttacatcagttgcattatctgtagcaaatttacga |
47760000 |
T |
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| Q |
217 |
cgagaatcacttgatgctgctatttctttgagtttcctcatcaagtt |
263 |
Q |
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| T |
47760001 |
cgagaatcacttgatgcagctttctctttcagtttcctcatcaagtt |
47760047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 47704888 - 47704943
Alignment:
| Q |
26 |
tttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttatta |
81 |
Q |
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|||||| ||||||||||||||||||||||| |||| | || |||| |||||||||| |
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| T |
47704888 |
tttcatatctaatattgcaacttggtttgataactcttccaccaatcttgttatta |
47704943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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