View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_high_125 (Length: 276)
Name: NF1773_high_125
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_125 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 2590069 - 2589824
Alignment:
| Q |
22 |
ataacacaaagcttccttctccaacgatctcttatatagcaaccaagcacaagtaaaatcataaattaccaattttaagtttcactctcttaagcaaata |
121 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
2590069 |
ataacacaaagcttccttctgcaacgatctcttatatagcaaccaagcacaagtaaaatcataaattaccaattttaagtttcactcttttaaacaaata |
2589970 |
T |
|
| Q |
122 |
gacccttatatatagttttagttttgtcacatatatattaaaaagtccaaaaccaaaaccaaaagaaggctatttgtgaaaaagtagtgatgaaagcttt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2589969 |
gacccttatatatagttttagttttgtcacatatatattaaaaagtccaaaaccaaaaccaaaagaaggctatttgtgaaaaagtagtgatgaaagcttt |
2589870 |
T |
|
| Q |
222 |
aaaaaggtgatttatgattttaccttaattattaattcccaatatt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2589869 |
aaaaaggtgatttatgattttaccttaattattaattcccaatatt |
2589824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 20903847 - 20903799
Alignment:
| Q |
66 |
aagcacaagtaaaatcataaattaccaattttaagtttcactctcttaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
20903847 |
aagcacaagtaaaatcataaattaccaattattagtttcactctcttaa |
20903799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 20922448 - 20922402
Alignment:
| Q |
66 |
aagcacaagtaaaatcataaattaccaattttaagtttcactctctt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
20922448 |
aagcacaagtaaaatcataaattaccaattattagtttcactctctt |
20922402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 41337002 - 41336960
Alignment:
| Q |
70 |
acaagtaaaatcataaattaccaattttaagtttcactctctt |
112 |
Q |
| |
|
||||||||||||| |||||||||||| | |||||||||||||| |
|
|
| T |
41337002 |
acaagtaaaatcacaaattaccaattattagtttcactctctt |
41336960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University