View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_high_147 (Length: 238)
Name: NF1773_high_147
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_147 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5534359 - 5534138
Alignment:
| Q |
1 |
atttgtttgaaatcattacctcggattggcacctgctcattttattctggctgtgaaatcaggtgattgtatctgcttagtcttgaaaccaatgaactcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5534359 |
atttgtttgaaatcattacctcggattggtacctgctcattttattctggctgtgaaatcaggtgattgtatctacttagtcttgaaaccaatgaactcg |
5534260 |
T |
|
| Q |
101 |
accatcagaattttatactgttttgggagtcttattgtctatataaattgaagtaaaataatatttacacataataatctattgactatgaataaaaagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5534259 |
accatcagaattttatactgttttgggagtcttattgtccatataaattgaagtaaaataatatttacacataataatctattgactatgaataaaaagt |
5534160 |
T |
|
| Q |
201 |
ttcatcaaataaatttatatgt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5534159 |
ttcatcaaataaatttatatgt |
5534138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University