View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_149 (Length: 237)
Name: NF1773_high_149
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_149 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 54606143 - 54605913
Alignment:
| Q |
1 |
taccatagccatgttaacgaattag----tctttctttcattgcatatgacaagtaacctttgaatgagttaaagaattagtcaatttcctggtcatttt |
96 |
Q |
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| T |
54606143 |
taccatagccatgttaacgaattagctagtctttctttcattccatatgacaagtaacctttgaatgagttaaagaattagccaatttcttggtcatttt |
54606044 |
T |
|
| Q |
97 |
tatgaattgttcttgggtaactaaagccagttatttaacttacctagtgaatttgagccaattatttatttacacgcaccataagtaactatgacaggaa |
196 |
Q |
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||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
54606043 |
tatgaattgttcttgggtaactaaagccatttatttagctaggctagtgaatttgagccaattatttatttacacgcaccataagtaactatgacaggga |
54605944 |
T |
|
| Q |
197 |
atttaagcatgctagtaaattgtggcctttg |
227 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
54605943 |
atttaagcatgctagtaaattgtggcctttg |
54605913 |
T |
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