View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_high_153 (Length: 233)

Name: NF1773_high_153
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_high_153
NF1773_high_153
[»] chr1 (2 HSPs)
chr1 (1-212)||(3134724-3134935)
chr1 (76-184)||(11049207-11049315)
[»] chr5 (3 HSPs)
chr5 (76-186)||(39097203-39097313)
chr5 (76-127)||(25548457-25548508)
chr5 (116-184)||(6951325-6951393)
[»] chr4 (2 HSPs)
chr4 (30-114)||(2635056-2635140)
chr4 (127-187)||(54549375-54549435)
[»] chr2 (3 HSPs)
chr2 (59-105)||(36374238-36374284)
chr2 (77-109)||(36256127-36256159)
chr2 (116-184)||(42740974-42741042)
[»] chr3 (2 HSPs)
chr3 (140-184)||(4526153-4526197)
chr3 (82-114)||(29371974-29372006)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 3134935 - 3134724
Alignment:
Q  1 aaaaatctttaatgagtgactaatctctctgtatgtttagtttcatttttatatgtaacaaaattgactttaaaagtgtagaattgattttgacatattt 100  Q
    ||||||| | |||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||    
T  3134935 aaaaatcctcaatgagtgaccaatctctttgtatgtttggtttcatttttatatgtaacaaaattgactttgaaggtgtaaaattgattttgacatattt 3134836  T
Q  101 aattgcttttaagtgtaattgattctattttaagataagatttgtaacttttgatcataaaattggtttttacacataaatttaaaagtttacccatttt 200  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3134835 gattgcttttaagtgtaattgattctactttaagataagatttgtaacttttgatcataaaattggtttttacacataaatttaaaattttacccatttt 3134736  T
Q  201 tacatgaatgat 212  Q
    ||||||||||||    
T  3134735 tacatgaatgat 3134724  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 11049207 - 11049315
Alignment:
Q  76 gtgtagaattgattttgacatatttaattgcttttaagtgtaattgattctattttaagataagatttgtaacttttgatcataaaattggtttttacac 175  Q
    ||||||||||||||  ||||| ||| ||||||||  |||  ||| ||||||| || ||| || |||||||| ||||||||  |||||||| |||||||||    
T  11049207 gtgtagaattgattcagacatgtttcattgctttcgagtagaatcgattctacttgaagctaggatttgtagcttttgattctaaaattgatttttacac 11049306  T
Q  176 ataaattta 184  Q
    | |||||||    
T  11049307 acaaattta 11049315  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 39097203 - 39097313
Alignment:
Q  76 gtgtagaattgattttgacatatttaattgcttttaagtgtaattgattctattttaagataagatttgtaacttttgatcataaaattggtttttacac 175  Q
    ||||||||||||||||||||| |||  ||| ||| | ||  ||||||||||| || ||| ||| ||||||||||||| || ||| ||||| |||| ||||    
T  39097203 gtgtagaattgattttgacatgtttggttggtttcaggtagaattgattctacttgaagctaaaatttgtaacttttaattatataattgattttcacac 39097302  T
Q  176 ataaatttaaa 186  Q
    |||||||||||    
T  39097303 ataaatttaaa 39097313  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 25548457 - 25548508
Alignment:
Q  76 gtgtagaattgattttgacatatttaattgcttttaagtgtaattgattcta 127  Q
    |||||||||||||| |||||| ||| |||||||||||||  |||||||||||    
T  25548457 gtgtagaattgattatgacatgtttgattgcttttaagtaaaattgattcta 25548508  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 6951393 - 6951325
Alignment:
Q  116 taattgattctattttaagataagatttgtaacttttgatcataaaattggtttttacacataaattta 184  Q
    |||||||||||| || ||| || |||||||| ||||||||  || ||||| ||| ||||||||||||||    
T  6951393 taattgattctacttgaagttaggatttgtagcttttgattctataattgatttgtacacataaattta 6951325  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 2635056 - 2635140
Alignment:
Q  30 tgtatgtttagtttcatttttatatgtaacaaaattgactttaaaagtgtagaattgattttgacatatttaattgcttttaagt 114  Q
    ||||||||| |||||| ||||| | | | ||||||||| | || ||||||| ||||||||||||||| ||| |||||||||||||    
T  2635056 tgtatgtttggtttcacttttagagggaccaaaattgattctagaagtgtaaaattgattttgacatgtttgattgcttttaagt 2635140  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 54549435 - 54549375
Alignment:
Q  127 attttaagataagatttgtaacttttgatcataaaattggtttttacacataaatttaaaa 187  Q
    |||| |||||||||||| |||||||| || ||| ||||| |||||| ||||||||||||||    
T  54549435 atttgaagataagatttataacttttaattatagaattgatttttatacataaatttaaaa 54549375  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 36374238 - 36374284
Alignment:
Q  59 caaaattgactttaaaagtgtagaattgattttgacatatttaattg 105  Q
    ||||||||| |||||| ||||| ||||||||||||||| ||||||||    
T  36374238 caaaattgattttaaaggtgtataattgattttgacatgtttaattg 36374284  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 36256159 - 36256127
Alignment:
Q  77 tgtagaattgattttgacatatttaattgcttt 109  Q
    |||||||||||||||||||||||| ||||||||    
T  36256159 tgtagaattgattttgacatatttgattgcttt 36256127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 42740974 - 42741042
Alignment:
Q  116 taattgattctattttaagataagatttgtaacttttgatcataaaattggtttttacacataaattta 184  Q
    |||||||||||| || ||| ||||||||||| ||||||||  || ||||| |||||||||  |||||||    
T  42740974 taattgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacactcaaattta 42741042  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 4526153 - 4526197
Alignment:
Q  140 atttgtaacttttgatcataaaattggtttttacacataaattta 184  Q
    ||||||||||||||||  |||||||| |||||||||| |||||||    
T  4526153 atttgtaacttttgattttaaaattgatttttacacacaaattta 4526197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 29371974 - 29372006
Alignment:
Q  82 aattgattttgacatatttaattgcttttaagt 114  Q
    ||||||||||||||||||| |||||||||||||    
T  29371974 aattgattttgacatatttgattgcttttaagt 29372006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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