View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_161 (Length: 227)
Name: NF1773_high_161
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_161 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 31379577 - 31379351
Alignment:
| Q |
1 |
ggctgtggaagattccctacaacaattgttgtacacataggaaaaatccttctcaaacccgccgttcaccataagatttgttttctcctcaaggtcttcg |
100 |
Q |
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| T |
31379577 |
ggctgtggaagattccctacaacaattgttgtacacataggaaaaatccttctcaaacccgccgttcaccataagatttgttttctcctcaaggtctttg |
31379478 |
T |
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| Q |
101 |
ataggttctttgttcagaatgtttgtcatgaagttgggattcaccagcaccaattgagagtgttcatannnnnnngcatgccctaaaggaatttgaatga |
200 |
Q |
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| T |
31379477 |
ataggttctttgttcagcatgtttgtcatgaagttgggattcaccagcaccaattgagagtgttcatatttttttgcatgccctaaaggaatttgaatga |
31379378 |
T |
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| Q |
201 |
actttgaattttggtgcttaagctcct |
227 |
Q |
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| T |
31379377 |
actttgaattttggtgcttaagctcct |
31379351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 31330795 - 31330569
Alignment:
| Q |
1 |
ggctgtggaagattccctacaacaattgttgtacacataggaaaaatccttctcaaacccgccgttcaccataagatttgttttctcctcaaggtcttcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
31330795 |
ggctgtggaagattccctacaacaattgttgtacacataggaaaaatccttctcaaacccaccgttcaccataagatttgttttctcctcaaggtctttg |
31330696 |
T |
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| Q |
101 |
ataggttctttgttcagaatgtttgtcatgaagttgggattcaccagcaccaattgagagtgttcatannnnnnngcatgccctaaaggaatttgaatga |
200 |
Q |
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| T |
31330695 |
ataggttctttgttcagcatgtttgtcatgaagttgggattcaccagcaccaattgagagtgttcatatttttttgcatgccctaaaggaatttgaatga |
31330596 |
T |
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| Q |
201 |
actttgaattttggtgcttaagctcct |
227 |
Q |
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| T |
31330595 |
actttgaattttggtgcttaagctcct |
31330569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 31318246 - 31318209
Alignment:
| Q |
23 |
caattgttgtacacataggaaaaatccttctcaaaccc |
60 |
Q |
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| T |
31318246 |
caattgttgtacacatcggaaaaatccttctcaaaccc |
31318209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 31369356 - 31369320
Alignment:
| Q |
23 |
caattgttgtacacataggaaaaatccttctcaaacc |
59 |
Q |
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| T |
31369356 |
caattgttgtacacatcggaaaaatccttctcaaacc |
31369320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 31314052 - 31313948
Alignment:
| Q |
12 |
attccctacaacaattgttgtacacataggaaaaatccttctcaaacccgccgttcaccataagatttgttttctcctcaaggtcttcgataggttcttt |
111 |
Q |
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||||||||| || |||||||||||||| | |||||| ||||||||||| | || |||||| ||||||| | ||||| ||||||| ||| | |||||| |
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| T |
31314052 |
attccctacgactattgttgtacacatcgaaaaaattgttctcaaacccagccctcgccataacatttgttgtttcctctaggtctttgatggtttcttt |
31313953 |
T |
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| Q |
112 |
gttca |
116 |
Q |
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|||| |
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| T |
31313952 |
cttca |
31313948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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