View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_high_162 (Length: 227)
Name: NF1773_high_162
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_162 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15169517 - 15169740
Alignment:
| Q |
1 |
ccctcaatgcaacagtcgctataagcgccataaaggttagcctttagtgaaactttttgttatcatagt---aactttaatttatatgtgtagaaaagtt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| |
|
|
| T |
15169517 |
ccctcaatgcaacagtcgctataagcgccataaaggttagcctttagtgaaactttttgttatcgtagtagtaactttaatttatatgcgtagaaaagtt |
15169616 |
T |
|
| Q |
98 |
ttacacatacattcaatcagatcttactattcagatataccataatgttattttctaaaatacttgcactagtaaatagtgaaatgtgattggatataga |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15169617 |
ttacacatacattcaatcagatcttactattcagatataccataatgttattttctaaaatacttgcactagtaaatagtgaaatgtgattggatataga |
15169716 |
T |
|
| Q |
198 |
aaacgtatttgttgaagtaactat |
221 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
15169717 |
aaacgtatttgttgaagtaactat |
15169740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University