View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_high_166 (Length: 221)

Name: NF1773_high_166
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_high_166
NF1773_high_166
[»] chr7 (21 HSPs)
chr7 (16-204)||(21627983-21628171)
chr7 (51-206)||(21704536-21704691)
chr7 (51-208)||(21651962-21652119)
chr7 (36-173)||(21771839-21771976)
chr7 (27-139)||(21740975-21741087)
chr7 (39-208)||(21714067-21714233)
chr7 (39-208)||(21808263-21808435)
chr7 (51-208)||(21992063-21992223)
chr7 (81-208)||(21788152-21788279)
chr7 (34-173)||(21763941-21764077)
chr7 (53-208)||(21663990-21664148)
chr7 (36-173)||(21725774-21725911)
chr7 (43-173)||(21785288-21785421)
chr7 (29-99)||(21681509-21681579)
chr7 (27-99)||(21622897-21622968)
chr7 (39-99)||(15713492-15713552)
chr7 (58-95)||(21689289-21689326)
chr7 (58-95)||(21791899-21791936)
chr7 (28-67)||(21639575-21639614)
chr7 (155-208)||(21792008-21792061)
chr7 (135-195)||(21646720-21646780)
[»] scaffold0182 (2 HSPs)
scaffold0182 (34-175)||(25186-25327)
scaffold0182 (36-138)||(34412-34514)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 21627983 - 21628171
Alignment:
Q  16 ataatatatgcattttcggtaagtttgaaagatcaatattcctcaaccattattatattgaaagaatgatggcatcccaaactattaaagaaaaatttgc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21627983 ataatatatgcattttcggtaagtttgaaagatcaatattcctcaaccattattatattgaaagaatgatggcatcccaaactattaaagaaaaatttgt 21628082  T
Q  116 ggagttaaaaaattcaaagcaaacaccctgaaatgcacgaccaaagatacaaagggtggccgatcatctcagaaatagaaaagattttg 204  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21628083 ggagttaaaaaattcaaagcaaacaccccgaaatgcacgaccaaagatacaaagggtggccgatcatctcagaaataaaaaagattttg 21628171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 21704536 - 21704691
Alignment:
Q  51 atattcctcaaccattattatattgaaagaatgatggcatcccaaactattaaagaaaaatttgcggagttaaaaaattcaaagcaaacaccctgaaatg 150  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||   |||||    
T  21704536 atattcctcaaccattattatattgaatgaatgatggcatcccaaactattaaagaaaaatttgtcgagttaaaaaattcaaagcaaacacctccaaatg 21704635  T
Q  151 cacgaccaaagatacaaagggtggccgatcatctcagaaatagaaaagattttgag 206  Q
    |||||||||||||||||||||||   ||  ||||||||| ||||||| | ||||||    
T  21704636 cacgaccaaagatacaaagggtgcaagagtatctcagaagtagaaaaaactttgag 21704691  T

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Target: chr7; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 21651962 - 21652119
Alignment:
Q  51 atattcctcaaccattattatattgaaagaatgatggcatcccaaactattaaagaaaaatttgcggagttaaaaaattcaaagcaaacaccctgaaatg 150  Q
    |||||| | |||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||  || |||| |||||||||||||||  ||||     
T  21651962 atattcattaaccattattatattgattgaatgatggcatcccaaactattaaagaaaaatttgtggaactacaaaaatcaaagcaaacaccccaaaatt 21652061  T
Q  151 cacgaccaaagatacaaagggtggccgatcatctcagaaatagaaaagattttgagaa 208  Q
    ||||||||||||||||||||||| |  |  ||||||||||||||||  ||||||||||    
T  21652062 cacgaccaaagatacaaagggtgccacagtatctcagaaatagaaacaattttgagaa 21652119  T

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Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 173
Target Start/End: Original strand, 21771839 - 21771976
Alignment:
Q  36 aagtttgaaagatcaatattcctcaaccattattatattgaaagaatgatggcatcccaaactattaaagaaaaatttgcggagttaaaaaattcaaagc 135  Q
    ||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |||  || |||| |||||||    
T  21771839 aagtttgaaagatcaatatccctcaaccattatcatattgaatgaatgatggcatccgaaactattaaagaaaaatttgtggaactacaaaaatcaaagc 21771938  T
Q  136 aaacaccctgaaatgcacgaccaaagatacaaagggtg 173  Q
    ||| ||||  |||| || |||| |||||||||||||||    
T  21771939 aaataccccaaaattcaagaccgaagatacaaagggtg 21771976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 21740975 - 21741087
Alignment:
Q  27 attttcggtaagtttgaaagatcaatattcctcaaccattattatattgaaagaatgatggcatcccaaactattaaagaaaaatttgcggagttaaaaa 126  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| || |||    
T  21740975 attttcgttaagtttgaaggatcaatattcctcaaccattattatattgaatgaatgatggcatcccaaactattaaagaaaaaattgtggagctacaaa 21741074  T
Q  127 attcaaagcaaac 139  Q
    | | |||||||||    
T  21741075 aattaaagcaaac 21741087  T

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Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 39 - 208
Target Start/End: Original strand, 21714067 - 21714233
Alignment:
Q  39 tttgaaagatcaatattcctcaaccattattatattgaaagaatgatggcatcccaaactattaaagaaaaatttgcggagttaaaaaattcaaagcaaa 138  Q
    |||||||||||||||| ||||||    |||||||||||| ||| |||||||||||||||||||||||||||||||| |||| || |||| |||| |||||    
T  21714067 tttgaaagatcaatatccctcaaa---tattatattgaatgaaggatggcatcccaaactattaaagaaaaatttgtggagctacaaaaatcaatgcaaa 21714163  T
Q  139 caccctgaaatgcacgaccaaagatacaaagggtggccgatcatctcagaaatagaaaagattttgagaa 208  Q
    |||||  |||| ||||||| ||||||||||||||||  || | | |||||||||||| | ||||||||||    
T  21714164 caccccaaaattcacgaccgaagatacaaagggtggttgaccgtttcagaaatagaacaaattttgagaa 21714233  T

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Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 208
Target Start/End: Complemental strand, 21808435 - 21808263
Alignment:
Q  39 tttgaaagatcaatattcctcaaccattattatattgaaagaatgatggcatcccaaacta---ttaaagaaaaatttgcggagttaaaaaattcaaagc 135  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||   || || ||||  ||| |||| ||||||||||||| |    
T  21808435 tttgcaagatcaatattcctcagccattattatattgaatgaatgatggaatcccaaactacccttgaaaaaaagattgtggagctaaaaaattcaaatc 21808336  T
Q  136 aaacaccctgaaatgcacgaccaaagatacaaagggtggccgatcatctcagaaatagaaaagattttgagaa 208  Q
    ||| ||||  |||| ||||||||||||||||||||||||| ||  ||||||||||||||| | || |||||||    
T  21808335 aaataccccaaaattcacgaccaaagatacaaagggtggctgagtatctcagaaatagaacaaatcttgagaa 21808263  T

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Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 21992063 - 21992223
Alignment:
Q  51 atattcctcaaccattattatattgaaagaatgatggcatcccaaacta---ttaaagaaaaatttgcggagttaaaaaattcaaagcaaacaccctgaa 147  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    || |||||||| ||| |||| || ||||||||||||||| ||||  ||    
T  21992063 atattcctcaaccattattatattgaatgaatgatggcatcccaaacttcccttgaagaaaaaattgtggagctagaaaattcaaagcaaataccccaaa 21992162  T
Q  148 atgcacgaccaaagatacaaagggtggccgatcatctcagaaatagaaaagattttgagaa 208  Q
    || ||||| || |||||||||||||||| ||  |||||| |||||||||||| ||||||||    
T  21992163 attcacgaacacagatacaaagggtggcagagtatctcaaaaatagaaaagactttgagaa 21992223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 81 - 208
Target Start/End: Original strand, 21788152 - 21788279
Alignment:
Q  81 atgatggcatcccaaactattaaagaaaaatttgcggagttaaaaaattcaaagcaaacaccctgaaatgcacgaccaaagatacaaagggtggccgatc 180  Q
    ||||||||||||||||||||||| |||||||||| ||||||| |||| |||||||||||||||  |||| ||||||| || |||||||||||||| ||      
T  21788152 atgatggcatcccaaactattaatgaaaaatttgtggagttacaaaaatcaaagcaaacaccccaaaattcacgaccgaaaatacaaagggtggcagagt 21788251  T
Q  181 atctcagaaatagaaaagattttgagaa 208  Q
    ||||||||||||||||| | ||||||||    
T  21788252 atctcagaaatagaaaaaactttgagaa 21788279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 173
Target Start/End: Original strand, 21763941 - 21764077
Alignment:
Q  34 gtaagtttgaaagatcaatattcctcaaccattattatattgaaagaatgatggcatcccaaactattaaagaaaaatttgcggagttaaaaaattcaaa 133  Q
    |||| |||| ||||||||||| |||||||||||| | ||||||| |||||||||||||||||||| ||||||||||||||| |||| || ||   |||||    
T  21763941 gtaactttgcaagatcaatatccctcaaccattagtgtattgaatgaatgatggcatcccaaactcttaaagaaaaatttgtggagctacaa---tcaaa 21764037  T
Q  134 gcaaacaccctgaaatgcacgaccaaagatacaaagggtg 173  Q
    ||||||||||  |||| ||||||| |||||||||||||||    
T  21764038 gcaaacaccccaaaattcacgacccaagatacaaagggtg 21764077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 208
Target Start/End: Original strand, 21663990 - 21664148
Alignment:
Q  53 attcctcaaccattattatattgaaagaatgatggcatcccaaacta---ttaaagaaaaatttgcggagttaaaaaattcaaagcaaacaccctgaaat 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   || || ||||| ||| |||| || ||||||||||||||| ||||  || |    
T  21663990 attcctcaaccattattatattgaaagaatgatggcatcccaaactacccttgaaaaaaaaattgtggagctagaaaattcaaagcaaataccccaaagt 21664089  T
Q  150 gcacgaccaaagatacaaagggtggccgatcatctcagaaatagaaaagattttgagaa 208  Q
     ||||||||||||||||||||||| |  |  |||||||||| |||||| | ||||||||    
T  21664090 tcacgaccaaagatacaaagggtgccacacaatctcagaaacagaaaaaactttgagaa 21664148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 173
Target Start/End: Original strand, 21725774 - 21725911
Alignment:
Q  36 aagtttgaaagatcaatattcctcaaccattattatattgaaagaatgatggcatcccaaactattaaagaaaaatttgcggagttaaaaaattcaaagc 135  Q
    |||||||| |||||||| | ||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |||  || |||| |||||||    
T  21725774 aagtttgacagatcaatttccctcaaccattatcatattgaatgaatgatggcatccgaaactattaaagaaaaatttgtggaactacaaaaatcaaagc 21725873  T
Q  136 aaacaccctgaaatgcacgaccaaagatacaaagggtg 173  Q
    ||| | ||  |||| || |||| |||||||||||||||    
T  21725874 aaatatcccaaaattcaagaccgaagatacaaagggtg 21725911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 21785288 - 21785421
Alignment:
Q  43 aaagatcaatattcctcaaccattattatattgaaagaatgatggcatcccaaacta---ttaaagaaaaatttgcggagttaaaaaattcaaagcaaac 139  Q
    |||||||||||| ||| ||||||||| ||||||||  ||||||| ||||||||||||   || || ||||| ||| |||| || |||||||||||||||     
T  21785288 aaagatcaatatcccttaaccattatcatattgaatcaatgatgacatcccaaactacccttgaaaaaaaaattgtggagctagaaaattcaaagcaaat 21785387  T
Q  140 accctgaaatgcacgaccaaagatacaaagggtg 173  Q
    ||||  |||| |||||||||||||||||||||||    
T  21785388 accccaaaattcacgaccaaagatacaaagggtg 21785421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 21681509 - 21681579
Alignment:
Q  29 tttcggtaagtttgaaagatcaatattcctcaaccattattatattgaaagaatgatggcatcccaaacta 99  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||    
T  21681509 tttcgttaagtttgaaagatcaatattcctcaaccattattacattgaatgaatgatgtcatcccaaacta 21681579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 21622897 - 21622968
Alignment:
Q  27 attttcggtaagtttgaaagatcaatatt--cctcaaccattattatattgaaagaatgatggcatcccaaacta 99  Q
    ||||||| ||||||||||||||||||||   ||||||||||||   ||||||| |||||||||||||||||||||    
T  21622897 attttcgttaagtttgaaagatcaatatatccctcaaccatta---tattgaatgaatgatggcatcccaaacta 21622968  T

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Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 15713492 - 15713552
Alignment:
Q  39 tttgaaagatcaatattcctcaaccattattatattgaaagaatgatggcatcccaaacta 99  Q
    |||| ||||||||||| |||||||||| |||||| |||| ||||||||||||| |||||||    
T  15713492 tttgcaagatcaatatccctcaaccatgattataatgaatgaatgatggcatcgcaaacta 15713552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 21689289 - 21689326
Alignment:
Q  58 tcaaccattattatattgaaagaatgatggcatcccaa 95  Q
    |||||||||||||||||||| |||||||||||||||||    
T  21689289 tcaaccattattatattgaatgaatgatggcatcccaa 21689326  T

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Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 21791899 - 21791936
Alignment:
Q  58 tcaaccattattatattgaaagaatgatggcatcccaa 95  Q
    |||||||||||||||||||| |||||||||||||||||    
T  21791899 tcaaccattattatattgaatgaatgatggcatcccaa 21791936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 21639575 - 21639614
Alignment:
Q  28 ttttcggtaagtttgaaagatcaatattcctcaaccatta 67  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  21639575 ttttcgttaagtttgaaagatcaatatccctcaaccatta 21639614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 21792008 - 21792061
Alignment:
Q  155 accaaagatacaaagggtggccgatcatctcagaaatagaaaagattttgagaa 208  Q
    ||||||||||||||||||||| ||  |||||||||| ||| || ||||||||||    
T  21792008 accaaagatacaaagggtggcagagtatctcagaaagagagaaaattttgagaa 21792061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 21646720 - 21646780
Alignment:
Q  135 caaacaccctgaaatgcacgaccaaagatacaaagggtggccgatcatctcagaaatagaa 195  Q
    |||||||||  |||| ||||||||||||||||||||||| |  |  |||||||||||||||    
T  21646720 caaacaccccaaaattcacgaccaaagatacaaagggtgccacagtatctcagaaatagaa 21646780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 175
Target Start/End: Original strand, 25186 - 25327
Alignment:
Q  34 gtaagtttgaaagatcaatattcctcaaccattattatattgaaagaatgatggcatcccaaactattaaagaaaaatttgcggagttaaaaaattcaaa 133  Q
    |||| |||| ||||||||||| |||||||||||| | ||||||| ||||||||||| |||||||| ||||||||||| ||| |||| || |||| |||||    
T  25186 gtaactttgcaagatcaatatccctcaaccattagtgtattgaatgaatgatggcagcccaaactcttaaagaaaaaattgaggagctacaaaaatcaaa 25285  T
Q  134 gcaaacaccctgaaatgcacgaccaaagatacaaagggtggc 175  Q
    ||||||||||  |||| ||| ||| |||||||||||||||||    
T  25286 gcaaacaccccaaaattcaccacccaagatacaaagggtggc 25327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 34412 - 34514
Alignment:
Q  36 aagtttgaaagatcaatattcctcaaccattattatattgaaagaatgatggcatcccaaactattaaagaaaaatttgcggagttaaaaaattcaaagc 135  Q
    |||||||| |||||||| | ||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |||  || |||| |||||||    
T  34412 aagtttgacagatcaatttccctcaaccattatcatattgaatgaatgatggcatccgaaactattaaagaaaaatttgtggaactacaaaaatcaaagc 34511  T
Q  136 aaa 138  Q
    |||    
T  34512 aaa 34514  T

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