View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_169 (Length: 215)
Name: NF1773_high_169
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_169 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 52 - 197
Target Start/End: Complemental strand, 36767231 - 36767093
Alignment:
| Q |
52 |
ctcttaccttgatttttagaagctctaatgtgtagcttaagaagttttgacaattttgatgttttccaaatagagtattttgtaactgattacttgattg |
151 |
Q |
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| T |
36767231 |
ctctcaccttgatttttagaagctttaatgtgtagcttaagaagttttgacaattttgatgttttccaaatagagtattttgta-------gcttgattg |
36767139 |
T |
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| Q |
152 |
aaatttgtagcatgtacaacttttgattcacctacgatttgttcat |
197 |
Q |
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| T |
36767138 |
aaatttgtagcatgtacaacttttgattcacctacgatttgttcat |
36767093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 61 - 198
Target Start/End: Complemental strand, 36754191 - 36754054
Alignment:
| Q |
61 |
tgatttttagaagctctaatgtgtagcttaagaagttttgacaattttgatgttttccaaatagagtattttgtaactgattacttgattgaaatttgta |
160 |
Q |
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|||||||||||||||| |||||||||||| || ||||| || |||||||||||||||||||||| || ||| || ||||||||||||||||||||||| |
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| T |
36754191 |
tgatttttagaagctccaatgtgtagcttgtgacgtttttacgattttgatgttttccaaatagattaaattgcaattgattacttgattgaaatttgta |
36754092 |
T |
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| Q |
161 |
gcatgtacaacttttgattcacctacgatttgttcatc |
198 |
Q |
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| T |
36754091 |
gcatgtacaacctttgattcaattacaacttgttcatc |
36754054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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