View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_17 (Length: 583)
Name: NF1773_high_17
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 17 - 567
Target Start/End: Original strand, 40222052 - 40222603
Alignment:
| Q |
17 |
tcaccacatttctctccagaggccaagtgagtgcaaacgaagcagaatgtggtatggtacaatctcatgctaatagatatcgaaccctgttagcataaaa |
116 |
Q |
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| T |
40222052 |
tcaccacatttctctccagaggccaagtgagtgcaaacgaagcagaatgtggtttggtacaatctcatgctaatagatatcgaaccctgttagcataaac |
40222151 |
T |
|
| Q |
117 |
cacaaatttataaaaatgtaagcaatgaatcataatcataccactgtatccagtacatagtcctacttcatcttgaaatctcacatttccatagcaaaat |
216 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40222152 |
cacaaatttacaaaaatgtaagcaatgaatcataatcataccactgtagccagtacatagtcctacttcatcttgaaatgtcacatttccatagcaaaat |
40222251 |
T |
|
| Q |
217 |
ctgaagcaacagctaattaattagaaccattttatagcccc-ctcatatataattgtactggacatgcgcatattgaaccacatatatgacatcaacgtg |
315 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
40222252 |
ctgaagcaatagctaattaattagaaccattttatagcccccctcatatataattgtacataacacgcgcatattgaaccacatatatgacatcaacgtg |
40222351 |
T |
|
| Q |
316 |
taatttattttatactatcaatcaatcataatcgtcagatcatttgacttttaacgaaccttatttccaaggtagcccatgatgccggtaccaacgcgag |
415 |
Q |
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| T |
40222352 |
taatttcttttatactatcaatcaatcataatcgtcagatcatttgacttttaacgaaccttatttccaaggtagcccatgatgccggtaccaacgcgag |
40222451 |
T |
|
| Q |
416 |
acacttttaaattgccaacgtggttgcgataatcggcgcgtacccacacgcacaagaagataccaaccatttgcttgcttgctactagactaaagcgttg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
40222452 |
acacttttaaattgccaacgtggttgcgataatcggcgcgtacccacacgcacaagaagataccgaccatttgcttgcttgctactaggctaaagcgttt |
40222551 |
T |
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| Q |
516 |
cttttgatttgggatttcattgtttgaggtgtttagagcttgatgaataagg |
567 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222552 |
cttttgatttgggatttcattgtttgaggtgtttagagcttgatgaataagg |
40222603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 39338417 - 39338380
Alignment:
| Q |
322 |
attttatactatcaatcaatcataatcgtcagatcatt |
359 |
Q |
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|||||||||||||||||||| |||||||||| |||||| |
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| T |
39338417 |
attttatactatcaatcaattataatcgtcaaatcatt |
39338380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 4076111 - 4076069
Alignment:
| Q |
317 |
aatttattttatactatcaatcaatcataatcgtcagatcatt |
359 |
Q |
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||||| ||||| |||||||||||||||||||||| |||||||| |
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| T |
4076111 |
aattttttttacactatcaatcaatcataatcgttagatcatt |
4076069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 36886013 - 36886051
Alignment:
| Q |
321 |
tattttatactatcaatcaatcataatcgtcagatcatt |
359 |
Q |
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||||||| ||||||||||||||||||||||||| ||||| |
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| T |
36886013 |
tattttacactatcaatcaatcataatcgtcaggtcatt |
36886051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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