View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_high_173 (Length: 210)

Name: NF1773_high_173
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_high_173
NF1773_high_173
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-198)||(42894-43090)
[»] chr1 (19 HSPs)
chr1 (1-133)||(18100745-18100877)
chr1 (1-133)||(21449314-21449446)
chr1 (4-130)||(14779787-14779913)
chr1 (13-131)||(24281521-24281639)
chr1 (2-131)||(15807754-15807883)
chr1 (1-133)||(12012546-12012678)
chr1 (1-131)||(9787612-9787742)
chr1 (13-133)||(28008352-28008472)
chr1 (13-184)||(33190923-33191094)
chr1 (29-133)||(25404228-25404332)
chr1 (1-75)||(17359398-17359472)
chr1 (13-62)||(21847827-21847876)
chr1 (13-133)||(16112068-16112188)
chr1 (13-89)||(17121278-17121354)
chr1 (1-87)||(31235824-31235911)
chr1 (13-133)||(25960899-25961018)
chr1 (15-57)||(16360119-16360161)
chr1 (3-57)||(22664445-22664499)
chr1 (29-114)||(24214796-24214881)
[»] chr4 (10 HSPs)
chr4 (2-131)||(19929407-19929536)
chr4 (1-133)||(22357262-22357394)
chr4 (1-130)||(13909091-13909220)
chr4 (1-133)||(14649130-14649262)
chr4 (13-118)||(5679452-5679558)
chr4 (1-118)||(17672228-17672345)
chr4 (13-133)||(19092542-19092662)
chr4 (13-87)||(9851219-9851293)
chr4 (13-87)||(19374591-19374665)
chr4 (29-89)||(8969506-8969566)
[»] chr7 (17 HSPs)
chr7 (13-118)||(3190807-3190912)
chr7 (1-133)||(4986829-4986961)
chr7 (1-133)||(4990927-4991059)
chr7 (13-133)||(7318521-7318641)
chr7 (13-89)||(1584447-1584523)
chr7 (1-133)||(10586758-10586887)
chr7 (13-133)||(6013839-6013959)
chr7 (1-133)||(16297572-16297704)
chr7 (13-84)||(3734843-3734914)
chr7 (3-118)||(17152896-17153011)
chr7 (1-49)||(4986767-4986815)
chr7 (1-49)||(4990865-4990913)
chr7 (1-133)||(15869831-15869963)
chr7 (1-133)||(39272905-39273038)
chr7 (1-54)||(9574642-9574695)
chr7 (13-57)||(7397388-7397432)
chr7 (13-133)||(17829815-17829935)
[»] chr8 (6 HSPs)
chr8 (1-133)||(19786968-19787100)
chr8 (19-133)||(14528392-14528506)
chr8 (13-81)||(25182210-25182278)
chr8 (13-87)||(24645086-24645160)
chr8 (1-133)||(34497350-34497482)
chr8 (1-75)||(13314782-13314856)
[»] chr6 (9 HSPs)
chr6 (1-133)||(28933390-28933522)
chr6 (1-114)||(21907670-21907783)
chr6 (13-133)||(19244823-19244943)
chr6 (13-133)||(15466612-15466732)
chr6 (19-118)||(21688598-21688697)
chr6 (1-133)||(6630422-6630554)
chr6 (13-57)||(9898770-9898814)
chr6 (13-89)||(22568085-22568161)
chr6 (13-87)||(8241519-8241593)
[»] scaffold0024 (1 HSPs)
scaffold0024 (17-133)||(39836-39952)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-133)||(168030-168162)
[»] chr3 (10 HSPs)
chr3 (1-133)||(8267167-8267299)
chr3 (13-89)||(31285792-31285868)
chr3 (13-87)||(17156037-17156111)
chr3 (29-133)||(38083820-38083924)
chr3 (1-62)||(8319282-8319343)
chr3 (13-53)||(8446066-8446106)
chr3 (1-87)||(19908544-19908631)
chr3 (1-99)||(21325574-21325672)
chr3 (1-133)||(41508602-41508735)
chr3 (13-105)||(12805653-12805745)
[»] scaffold0427 (1 HSPs)
scaffold0427 (13-133)||(2549-2670)
[»] chr2 (6 HSPs)
chr2 (1-118)||(29027732-29027849)
chr2 (13-133)||(25885193-25885313)
chr2 (13-133)||(32085709-32085829)
chr2 (1-56)||(28605986-28606041)
chr2 (23-133)||(25887633-25887744)
chr2 (1-75)||(26667533-26667607)
[»] scaffold0008 (1 HSPs)
scaffold0008 (3-99)||(55099-55195)
[»] chr5 (8 HSPs)
chr5 (3-133)||(22755759-22755889)
chr5 (17-89)||(24266734-24266806)
chr5 (17-89)||(24343365-24343437)
chr5 (13-198)||(34487880-34488065)
chr5 (38-133)||(24265203-24265298)
chr5 (38-133)||(24341834-24341929)
chr5 (1-75)||(23388644-23388718)
chr5 (13-82)||(18208034-18208103)
[»] scaffold0043 (1 HSPs)
scaffold0043 (13-87)||(89633-89707)
[»] scaffold0622 (1 HSPs)
scaffold0622 (13-133)||(974-1094)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-75)||(3750-3824)


Alignment Details
Target: scaffold0062 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 43090 - 42894
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| ||||||||    
T  43090 tgttggataattaataacattcatgtcaagtttagttatcttaagtagattatgtaactgatgaggctgttgggaagttctaacctagttggttgtcaaa 42991  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgtnnnnnnntctatattatctcggttgatctcgatttatccactgatggctaattgcacctgatgat 198  Q
    ||||| ||| |||| ||||| ||||||||||||       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42990 ctgcacctgttgattgcatgacgatccttacgt-gcggggtctatattatctcggttgatctcgatttatctactgatggctaattgcacctgatgat 42894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 18100877 - 18100745
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||| |||| |||| ||||||| ||||||||||| ||| |||||||     
T  18100877 tgttggatattaaataacagtcatgtcacgtttagttatcttaagtagactatacaagtgatgaggccgttgggacgttctaacctacttggttgtcaag 18100778  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgt 133  Q
     |||| ||||||||| || || |||||||||||    
T  18100777 ttgcacctgctgatcacacggtgatccttacgt 18100745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 21449314 - 21449446
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||| | | ||||||  |||||||||||| |||||||| ||||| ||||||| ||||||||| ||||||| ||||||||||||| | |||||||     
T  21449314 tgttggatattaagtaacatatatgtcacgtttatttatcttaggtagactatacaaatgataaggcggttgggacgttctaacctagtcggttgtcaag 21449413  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgt 133  Q
    || || |||||| |||||||| |||||||||||    
T  21449414 cttcacctgctggtcgcatggtgatccttacgt 21449446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 14779787 - 14779913
Alignment:
Q  4 tggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactg 103  Q
    |||||| ||| |||||| |||||| |||||| |||||| | ||||| ||||||| ||||||||| ||||||| ||||||||||||| | ||||||| |||    
T  14779787 tggatattgagtaacatacatgtcgcgtttatttatctcaggtagactatacaagtgataaggccgttgggacgttctaacctagtcggttgtcaagctg 14779886  T
Q  104 caactgctgatcgcatggcgatcctta 130  Q
    || |||||||||||| || ||||||||    
T  14779887 cacctgctgatcgcacggtgatcctta 14779913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 24281521 - 24281639
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctg 112  Q
    ||||||||||||||| ||||||||||||||||||||| ||| ||| |||| |||||||||||| ||||||||||||| |  |||||| || || ||||||    
T  24281521 aataacattcatgtcccgtttagttatcttaagtagactatgcaagtgatgaggctgttgggacgttctaacctagtcgggtgtcaagctccacctgctg 24281620  T
Q  113 atcgcatggcgatccttac 131  Q
     |||||  | |||||||||    
T  24281621 gtcgcacagtgatccttac 24281639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 15807883 - 15807754
Alignment:
Q  2 gttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaac 101  Q
    |||||||| | ||||| |||||||||  |||||||||||||||||||| ||||||| |||| |||  ||||||| ||||||||||| ||| |||||||      
T  15807883 gttggatattaaataatattcatgtcgtgtttagttatcttaagtagactatacaagtgatgaggtcgttgggacgttctaacctaattggttgtcaagt 15807784  T
Q  102 tgcaactgctgatcgcatggcgatccttac 131  Q
    |||| ||||||||| || || |||||||||    
T  15807783 tgcacctgctgatcacacggtgatccttac 15807754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 12012678 - 12012546
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||| | |||||||||||||||||||||| |||||||||||||| ||||||| |||| |||| ||||||| || |||||||| |   |||||||     
T  12012678 tgttggatattaaataacattcatgtcacgtttatttatcttaagtagactatacaagtgatgaggccgttgggacgtgctaacctaatcagttgtcaag 12012579  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgt 133  Q
      ||| |||||||||||| |  |||||||||||    
T  12012578 tcgcatctgctgatcgcacgatgatccttacgt 12012546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 9787742 - 9787612
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||||  ||||||||||||||   |||||  || |||||||||| ||||||| ||||||||| ||||||| ||||||||||||| | |||||||     
T  9787742 tgttggataaaaaataacattcatgttgtgtttaagtaccttaagtagactatacaagtgataaggccgttgggacgttctaacctagtcggttgtcaag 9787643  T
Q  101 ctgcaactgctgatcgcatggcgatccttac 131  Q
    ||||| ||| |||||||| ||  ||||||||    
T  9787642 ctgcacctgttgatcgcacggtaatccttac 9787612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 28008352 - 28008472
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctg 112  Q
    ||||||| ||||||| |||||| |||||||||||||||||||||| || | ||| |||||||| ||| |||| || | | ||||||| ||||| ||||||    
T  28008352 aataacagtcatgtcgcgtttatttatcttaagtagattatacaagtggtgaggttgttgggacgttataacttaatcggttgtcaagctgcacctgctg 28008451  T
Q  113 atcgcatggcgatccttacgt 133  Q
    ||||||  | |||||||||||    
T  28008452 atcgcacagtgatccttacgt 28008472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 33190923 - 33191094
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctg 112  Q
    ||||||||||||||| | |||||||||||||||||| |||||||| |||| ||   ||| ||| ||| ||||||||| | ||||||| ||||| |||||     
T  33190923 aataacattcatgtcgcatttagttatcttaagtaggttatacaagtgatgagttcgttaggacgttttaacctagtcgattgtcaagctgcacctgcta 33191022  T
Q  113 atcgcatggcgatccttacgtnnnnnnntctatattatctcggttgatctcgatttat-ccactgatggctaa 184  Q
    ||||||  | |||||||||||       |||||| ||||||||||||||| | ||||| || |||||||||||    
T  33191023 atcgcacagtgatccttacgt-gcagggtctatactatctcggttgatctaggtttatccctctgatggctaa 33191094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 25404332 - 25404228
Alignment:
Q  29 cgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctgatcgcatggcgatcct 128  Q
    |||||| ||||||||  |||| ||||||| ||||||||| ||||||| ||| ||||||||||| ||||||| ||||| ||| ||||||||  | ||||||    
T  25404332 cgtttatttatcttagatagactatacaagtgataaggccgttgggacgttttaacctagttggttgtcaagctgcacctgttgatcgcacagtgatcct 25404233  T
Q  129 tacgt 133  Q
    |||||    
T  25404232 tacgt 25404228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17359398 - 17359472
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttggga 75  Q
    ||||||||| | ||||||| ||||||| |||||| |||||||| ||||| ||||||| |||| ||||||||||||    
T  17359398 tgttggatattaaataacaatcatgtcgcgtttatttatcttaggtagactatacaagtgatgaggctgttggga 17359472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 21847827 - 21847876
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgat 62  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||| ||||    
T  21847827 aataacattcatgtcgcgtttagttatcttaagtagactatacaagtgat 21847876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 16112068 - 16112188
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctg 112  Q
    ||||||| ||||||   |||||||||||||||||||| ||||||| |||| ||| ||||||||  ||||||| ||||   |||||||  | || ||| ||    
T  16112068 aataacagtcatgtagagtttagttatcttaagtagactatacaagtgatgaggatgttgggacattctaacgtagtcagttgtcaagttacacctgttg 16112167  T
Q  113 atcgcatggcgatccttacgt 133  Q
    |||||| || |||||||||||    
T  16112168 atcgcacggagatccttacgt 16112188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 17121354 - 17121278
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagt 89  Q
    ||||||||||||||| |||||| ||||||||||||||||||  || |||| |||  |||||||  ||||||||||||    
T  17121354 aataacattcatgtcgcgtttacttatcttaagtagattatctaagtgatgaggtcgttgggacattctaacctagt 17121278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 31235911 - 31235824
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagtt-ctaaccta 87  Q
    ||||||||| | ||||||| ||||||||| |||| |||||||  ||||| ||||||| |||| |||||||||||| ||| ||||||||    
T  31235911 tgttggatattaaataacagtcatgtcacatttatttatctttggtagactatacaagtgatgaggctgttgggatgttactaaccta 31235824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 25961018 - 25960899
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctg 112  Q
    |||||||||||||||  |||| ||||||||||||||| ||||||| || | |||| |||||| | |||||| |||||   |||||||  | || ||  ||    
T  25961018 aataacattcatgtcgtgtttcgttatcttaagtagactatacaagtgttgaggccgttggg-acttctaatctagtcagttgtcaagttacacctattg 25960920  T
Q  113 atcgcatggcgatccttacgt 133  Q
    ||| |||||||||||||||||    
T  25960919 atcacatggcgatccttacgt 25960899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 16360119 - 16360161
Alignment:
Q  15 taacattcatgtcacgtttagttatcttaagtagattatacaa 57  Q
    ||||||||||| || |||||||||||||||||||| |||||||    
T  16360119 taacattcatgccatgtttagttatcttaagtagactatacaa 16360161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 22664445 - 22664499
Alignment:
Q  3 ttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaa 57  Q
    ||||||| | ||||||||| |||||| |||||||||||||| ||||| |||||||    
T  22664445 ttggatattaaataacatttatgtcatgtttagttatcttaggtagactatacaa 22664499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 24214796 - 24214881
Alignment:
Q  29 cgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctgat 114  Q
    ||||||||||||||||||||| |||  || |||| |||  | || || ||||||||||||| | ||||||| ||||| ||||||||    
T  24214796 cgtttagttatcttaagtagactattgaagtgatgaggtcgatgagacgttctaacctagtcggttgtcaagctgcacctgctgat 24214881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 19929536 - 19929407
Alignment:
Q  2 gttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaac 101  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||  |||||| ||||| ||||||| | |||||||||    
T  19929536 gttggataataaataacattcatgtcgcgtttagttatcttaagtagactatacaagtgatgaggcctttgggatgttctgacctagtcggttgtcaaac 19929437  T
Q  102 tgcaactgctgatcgcatggcgatccttac 131  Q
    |||| |||| ||||||| |  |||||||||    
T  19929436 tgcacctgccgatcgcacgttgatccttac 19929407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 22357394 - 22357262
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||||| ||||| || |||||| |||||||||||||||| |||| ||||||| |||| ||  ||||| ||  |||||||||||| | |||||||     
T  22357394 tgttggataataaataaaatccatgtcgcgtttagttatcttaaatagaatatacaagtgatgagattgttgagacattctaacctagtcggttgtcaag 22357295  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgt 133  Q
    ||||| ||| |||||||| || |||||||||||    
T  22357294 ctgcacctgttgatcgcacggtgatccttacgt 22357262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 13909091 - 13909220
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||| | ||||||||  |||||| ||||| |||| ||| ||||||||||||| ||||||||| ||||||| ||||||||||||| | || ||||     
T  13909091 tgttggatattaaataacatatatgtcatgtttatttatattaggtagattatacaagtgataaggccgttgggacgttctaacctagtcggttttcaag 13909190  T
Q  101 ctgcaactgctgatcgcatggcgatcctta 130  Q
     |||| ||| |||||||| || ||||||||    
T  13909191 ttgcacctgttgatcgcacggtgatcctta 13909220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 14649130 - 14649262
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||||| ||||||||||  ||| |||||||||||||||| |||| ||||||| |||  |||  ||||||| |||||||||||||   |||||||     
T  14649130 tgttggataataaataacattctagtcgcgtttagttatcttaactagactatacaagtgacgaggtcgttgggacgttctaacctagtcagttgtcaag 14649229  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgt 133  Q
    ||||| ||| |||||||| || ||||| |||||    
T  14649230 ctgcacctgttgatcgcacggtgatccatacgt 14649262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 5679452 - 5679558
Alignment:
Q  13 aataacattcatgtcacgtttagttatctt-aagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgct 111  Q
    ||||||||||||||| |||||||||||||| ||||||| ||||||| | || ||| |||||||| ||||||| ||||| |  ||| || ||||| |||||    
T  5679452 aataacattcatgtcgcgtttagttatcttaaagtagactatacaagtaatgaggttgttgggacgttctaagctagtcgggtgttaagctgcacctgct 5679551  T
Q  112 gatcgca 118  Q
    |||||||    
T  5679552 gatcgca 5679558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 17672228 - 17672345
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||| | ||||||| ||||||| |||||| ||||||||| |||| ||||||  |||| |||  ||||||| | ||||||||| | | |||||||     
T  17672228 tgttggatattaaataacagtcatgtcgcgtttatttatcttaaatagactatacaggtgatgaggtcgttgggacgctctaacctaatcgattgtcaag 17672327  T
Q  101 ctgcaactgctgatcgca 118  Q
    ||||| ||||||||||||    
T  17672328 ctgcacctgctgatcgca 17672345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 19092542 - 19092662
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctg 112  Q
    ||||||||||||||  |||||||||| |||||||||| ||||||| |||| || | ||||||| |||||||| | ||   ||| ||| ||||| ||| ||    
T  19092542 aataacattcatgttgcgtttagttaacttaagtagactatacaagtgatgagaccgttgggacgttctaactttgtcagttgccaagctgcacctgttg 19092641  T
Q  113 atcgcatggcgatccttacgt 133  Q
    ||||||||  |||||||||||    
T  19092642 atcgcatgatgatccttacgt 19092662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 9851293 - 9851219
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaaccta 87  Q
    ||||| ||||||||| |||||||||||||| |||||| ||||||  ||||||| |||||| ||  ||||||||||    
T  9851293 aataatattcatgtcgcgtttagttatcttgagtagaatatacagatgataagcctgttgcgacattctaaccta 9851219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 19374665 - 19374591
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaaccta 87  Q
    ||||||||||||||||| |||||||||| |||||||| |||  || |||  || | ||||||| |||||||||||    
T  19374665 aataacattcatgtcacatttagttatcctaagtagactatctaagtgaggagtcggttgggatgttctaaccta 19374591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 8969566 - 8969506
Alignment:
Q  29 cgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagt 89  Q
    ||||||||||||| ||||||| ||||||  |||| |||| || |||| |||||||||||||    
T  8969566 cgtttagttatctgaagtagactatacacgtgatgaggccgtcgggacgttctaacctagt 8969506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 3190912 - 3190807
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctg 112  Q
    ||||||| ||||||||| ||||||||||||||||||| ||||||| |||| |||| | |||||||||||||||| || | ||||||||||||| ||||||    
T  3190912 aataacagtcatgtcacatttagttatcttaagtagactatacaagtgatgaggccgatgggaagttctaacctggtcggttgtcaaactgcatctgctg 3190813  T
Q  113 atcgca 118  Q
    ||||||    
T  3190812 atcgca 3190807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 4986829 - 4986961
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||| | ||||||||||||||| ||||||||||||||||||||| |||| || |||| |||  ||||| | ||||||||||||| | |||||||     
T  4986829 tgttggatattaaataacattcatgtcgcgtttagttatcttaagtagactatataagtgatgaggtcgttggaacgttctaacctagtcggttgtcaag 4986928  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgt 133  Q
     || | ||| |||||||| || |||||||||||    
T  4986929 ttgtatctgttgatcgcacggtgatccttacgt 4986961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 4990927 - 4991059
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||| | ||||||||||||||| ||||||||||||||||||||| |||| || |||| |||  ||||| | ||||||||||||| | |||||||     
T  4990927 tgttggatattaaataacattcatgtcgcgtttagttatcttaagtagactatataagtgatgaggtcgttggaacgttctaacctagtcggttgtcaag 4991026  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgt 133  Q
     || | ||| |||||||| || |||||||||||    
T  4991027 ttgtatctgttgatcgcacggtgatccttacgt 4991059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 7318521 - 7318641
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctg 112  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||| |||| || | ||||||| ||| ||||||||| | ||||||| |||||  |||||    
T  7318521 aataacattcatgttgcgtttagttatcttaagtagactatacaagtgatgagaccgttgggacgttataacctagtcggttgtcaagctgcacttgctg 7318620  T
Q  113 atcgcatggcgatccttacgt 133  Q
    |||||| || ||||| |||||    
T  7318621 atcgcacggtgatccatacgt 7318641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 1584447 - 1584523
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagt 89  Q
    |||||||||||| || ||||||||||||||||||||| ||||||| |||||||| ||||||||  ||||||||||||    
T  1584447 aataacattcatatcgcgtttagttatcttaagtagactatacaagtgataaggttgttgggactttctaacctagt 1584523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 10586887 - 10586758
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||| | ||||||||||||||| ||||||||||||||||||||| |||| ||  ||| ||   ||||||| |||||||| |||| | |||||||     
T  10586887 tgttggatattaaataacattcatgtcgcgtttagttatcttaagtagactataaaaaggatgag---gttgggacgttctaacttagtcggttgtcaag 10586791  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgt 133  Q
     |||| ||  ||||||||||| |||||||||||    
T  10586790 ttgcacctattgatcgcatggtgatccttacgt 10586758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 6013839 - 6013959
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctg 112  Q
    ||||||||||||||| |||||||||||| ||| |||| ||||||| |||| |||  ||||||| ||||||||||||| | || | ||  |||| ||| ||    
T  6013839 aataacattcatgtcccgtttagttatcataaatagactatacaagtgatgaggacgttgggacgttctaacctagtcggtttttaagttgcatctgttg 6013938  T
Q  113 atcgcatggcgatccttacgt 133  Q
    |||||| || |||||||||||    
T  6013939 atcgcacggtgatccttacgt 6013959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 16297704 - 16297572
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||| | ||||||| ||||||| |||||| ||| |||||||||| ||||||| |||  ||||  |||||| ||||||||||| | | |||||||     
T  16297704 tgttggatattaaataacagtcatgtcgcgtttatttaccttaagtagactatacaagtgacgaggccattgggacgttctaacctaatcggttgtcaag 16297605  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgt 133  Q
    ||||| ||||| || ||| || |||||||||||    
T  16297604 ctgcacctgctcattgcacggtgatccttacgt 16297572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 3734843 - 3734914
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaac 84  Q
    |||||||||||||||| |||||||||| ||||||||| ||||||| |||| ||||||||| || ||||||||    
T  3734843 aataacattcatgtcatgtttagttattttaagtagactatacaagtgatgaggctgttgagacgttctaac 3734914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 17153011 - 17152896
Alignment:
Q  3 ttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaact 102  Q
    ||||||| | ||||||| |  |||| ||||||||||||||||||||| ||||||| |||| |||| |||| ||  |||||||||||| | ||||||| ||    
T  17153011 ttggatattaaataacagttgtgtcgcgtttagttatcttaagtagactatacaagtgatgaggccgttgagacattctaacctagtcggttgtcaatct 17152912  T
Q  103 gcaactgctgatcgca 118  Q
    ||| ||  ||||||||    
T  17152911 gcacctattgatcgca 17152896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4986767 - 4986815
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtaga 49  Q
    ||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  4986767 tgttggatattaaataacattcatgtcgcgtttagttatcttaagtaga 4986815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4990865 - 4990913
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtaga 49  Q
    ||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  4990865 tgttggatattaaataacattcatgtcgcgtttagttatcttaagtaga 4990913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 15869831 - 15869963
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||||| ||||| ||| | |||  |||||||||||||||||||| ||| ||| |||| |||  ||||| | ||||||| ||||     ||||||     
T  15869831 tgttggataataaataaaattaacgtcgtgtttagttatcttaagtagactatgcaagtgatgaggtcgttggaacgttctaaactagacaggtgtcaag 15869930  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgt 133  Q
     |||| ||||||||||||||| |||||||||||    
T  15869931 atgcacctgctgatcgcatggtgatccttacgt 15869963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 39273038 - 39272905
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagtt-ctaacctagttgtttgtcaa 99  Q
    ||||||||| | ||||| | | ||||| |||||| |||||||| ||||| ||||||| |||| |||| |||| || ||| |||||||||| | | |||||    
T  39273038 tgttggatattaaataaaagtaatgtcgcgtttatttatcttaggtagactatacaagtgatgaggccgttgagacgtttctaacctagtcggtcgtcaa 39272939  T
Q  100 actgcaactgctgatcgcatggcgatccttacgt 133  Q
      |||| ||||||||| || || |||||||||||    
T  39272938 gttgcacctgctgatcacacggtgatccttacgt 39272905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9574642 - 9574695
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattata 54  Q
    ||||||||| | ||||||| ||||||| ||||| ||||||||||||||| ||||    
T  9574642 tgttggatattaaataacaatcatgtcgcgttttgttatcttaagtagactata 9574695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 7397388 - 7397432
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaa 57  Q
    ||||||||||||||  || |||||||||||||||||| |||||||    
T  7397388 aataacattcatgtggcgattagttatcttaagtagactatacaa 7397432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 17829815 - 17829935
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctg 112  Q
    ||||| |||||||||| ||||| |||| ||||||||| ||||||| |||| | |  ||||| | ||||||||||| | | |||||||  |||| | | ||    
T  17829815 aataaaattcatgtcatgtttatttatgttaagtagactatacaagtgatgaagtcgttggtacgttctaacctaatcggttgtcaagttgcaccagttg 17829914  T
Q  113 atcgcatggcgatccttacgt 133  Q
    ||| || || |||||||||||    
T  17829915 atcacacggtgatccttacgt 17829935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 19786968 - 19787100
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||| | || | |||||||||| |||||||||||||||||| || ||||||  |||| |||| ||||||| ||||||||||||||| |||||||     
T  19786968 tgttggatattaaaaagcattcatgtcgcgtttagttatcttaagtcgactatacaggtgatgaggccgttgggatgttctaacctagttggttgtcaag 19787067  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgt 133  Q
     |||| |||||||||||| | ||||||||||||    
T  19787068 atgcacctgctgatcgcacgacgatccttacgt 19787100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 14528392 - 14528506
Alignment:
Q  19 attcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctgatcgca 118  Q
    ||||||||| |||||||||||||||| |||| ||||||| |||| ||||| ||||||  || ||||||||| | ||||||| ||||| |||||| |||||    
T  14528392 attcatgtcgcgtttagttatcttaaatagactatacaagtgatgaggctattgggacattttaacctagtcggttgtcaagctgcacctgctggtcgca 14528491  T
Q  119 tggcgatccttacgt 133  Q
     || || ||||||||    
T  14528492 cggtgaaccttacgt 14528506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 25182278 - 25182210
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttct 81  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| | ||||||  ||||||| |||||    
T  25182278 aataacattcatgtcacgtttagttatcttaagtagactatacaaataataaggtcgttgggacgttct 25182210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 24645086 - 24645160
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaaccta 87  Q
    |||||| |||||||| ||||||||||||||||||| | ||||||| |||| |||| ||||||| |||||||||||    
T  24645086 aataactttcatgtcgcgtttagttatcttaagtatactatacaagtgatgaggccgttgggacgttctaaccta 24645160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 34497350 - 34497482
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||| | ||||||||||||||||| |||| |||||||||||| | |||| || |||| |||  ||||||| ||||||||||| | | |||||||     
T  34497350 tgttggatattaaataacattcatgtcacatttatttatcttaagtaaactataaaattgatgaggtcgttgggacgttctaacctaatcgattgtcaag 34497449  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgt 133  Q
     ||||  |||||||| || |  |||||||||||    
T  34497450 atgcacatgctgatcacacgatgatccttacgt 34497482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 13314856 - 13314782
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttggga 75  Q
    ||||||||| | ||||||||||||||| |||||| |||||||| ||||| ||||||| ||||||||  |||||||    
T  13314856 tgttggatattaaataacattcatgtcgcgtttatttatcttaggtagactatacaagtgataaggtcgttggga 13314782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 28933522 - 28933390
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||| | ||||||||||||||||| ||||||||| ||||||||| ||||||| |||| |||  ||||||| ||||||||||||| |  ||||||     
T  28933522 tgttggatattaaataacattcatgtcacatttagttatattaagtagactatacaagtgatgaggtcgttgggatgttctaacctagtcgggtgtcaag 28933423  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgt 133  Q
    ||||| ||| |||||||| || |||||||||||    
T  28933422 ctgcacctgttgatcgcacggtgatccttacgt 28933390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 21907670 - 21907783
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||| | |||||||||||||||  |||||||||||||||||||| ||||||| |||| ||| |||||| | ||||||||||||| | |||||||     
T  21907670 tgttggatattaaataacattcatgtcgtgtttagttatcttaagtagactatacaagtgatgaggttgttggtacgttctaacctagtcggttgtcaag 21907769  T
Q  101 ctgcaactgctgat 114  Q
    ||||| ||||||||    
T  21907770 ctgcacctgctgat 21907783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 19244823 - 19244943
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctg 112  Q
    ||||||||||| |||| ||||||||||||||||| || ||||||| |||| |||||||| ||| ||||||||||||| | | ||||| ||||| ||||||    
T  19244823 aataacattcacgtcatgtttagttatcttaagttgagtatacaagtgatgaggctgttaggacgttctaacctagtcggtcgtcaagctgcacctgctg 19244922  T
Q  113 atcgcatggcgatccttacgt 133  Q
    |||||| || ||||| |||||    
T  19244923 atcgcacggtgatccctacgt 19244943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 15466612 - 15466732
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctg 112  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||| |||| |||| ||||||| || |||||||| | | |||| ||  ||||  | |||    
T  15466612 aataacatttatgtcacgtttagttatcttaagtagactatacaaatgatgaggccgttgggacgtcctaacctactcggttgttaagatgcacatactg 15466711  T
Q  113 atcgcatggcgatccttacgt 133  Q
    ||||||||  |||||||||||    
T  15466712 atcgcatgatgatccttacgt 15466732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 21688697 - 21688598
Alignment:
Q  19 attcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctgatcgca 118  Q
    ||||||||| |||||||| |||||||||||| ||||||| ||||||| || |||||| ||||||||| ||| | ||||||| ||||| ||| ||||||||    
T  21688697 attcatgtcgcgtttagtcatcttaagtagactatacaagtgataagtctattgggacgttctaaccaagtcggttgtcaagctgcacctgttgatcgca 21688598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 6630554 - 6630422
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||| ||||  |   |||| ||  |||||||||| | | |||||||     
T  6630554 tgttggataataaataacattcatgtcgcgttttgttatcttaagtagactatacaagtgatgggtacgttgagacattctaacctactcggttgtcaag 6630455  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgt 133  Q
    ||||| | |||||||||| |  |||||||||||    
T  6630454 ctgcaccagctgatcgcacgatgatccttacgt 6630422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 9898814 - 9898770
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaa 57  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||    
T  9898814 aataacattcatgtcgcgtttagttatcttaagtagactatacaa 9898770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 22568085 - 22568161
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagt 89  Q
    ||||||||| ||||  | ||||||||||||||||||| ||||||| |||| |||  ||||||| |||||||||||||    
T  22568085 aataacatttatgttgcatttagttatcttaagtagaatatacaagtgatgaggtcgttgggatgttctaacctagt 22568161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 8241519 - 8241593
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaaccta 87  Q
    ||||||||||||||| |||||| ||||||||||||||  |||||| |||| |||  |||| || |||||||||||    
T  8241519 aataacattcatgtcgcgtttatttatcttaagtagacaatacaagtgatgagggcgttgcgatgttctaaccta 8241593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 39836 - 39952
Alignment:
Q  17 acattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctgatcg 116  Q
    |||||||| | |||||||||||||||||||||| ||||||| ||||  ||  ||||||| ||||||||||||| | ||||||| ||||| ||||||| ||    
T  39836 acattcatcttacgtttagttatcttaagtagactatacaagtgatgtggtcgttgggacgttctaacctagtcggttgtcaagctgcacctgctgagcg 39935  T
Q  117 catggcgatccttacgt 133  Q
    || || |||||||||||    
T  39936 cacggtgatccttacgt 39952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 168162 - 168030
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||||| ||||||||||  ||| |||||||||||||||| |||| ||||||| |||  |||  ||||||| |||||||||||||   |||||||     
T  168162 tgttggataataaataacattctagtcgcgtttagttatcttaactagactatacaagtgacgaggtcgttgggacgttctaacctagtcagttgtcaag 168063  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgt 133  Q
    ||||| ||| |||||||| || ||||| |||||    
T  168062 ctgcacctgttgatcgcacggtgatccatacgt 168030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 8267167 - 8267299
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    ||||||||| | |||||||||||||||||||||| ||||||||| |||| ||| |||||||| |||  |||| || ||||  ||||||| | |||||||     
T  8267167 tgttggatattaaataacattcatgtcacgtttaattatcttaaatagactatgcaactgatgaggtcgttgtgacgttcctacctagtcggttgtcaag 8267266  T
Q  101 ctgcaactgctgatcgcatggcgatccttacgt 133  Q
    ||||| | |||||||||| || |||| ||||||    
T  8267267 ctgcacccgctgatcgcaaggtgatctttacgt 8267299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 31285868 - 31285792
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagt 89  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||  |||||| |||||||||||||    
T  31285868 aataacattcatgtcacgtttatttatcttaagtagactatacaagtgatgaggccattgggacgttctaacctagt 31285792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 17156037 - 17156111
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaaccta 87  Q
    |||||||||||||||||||||||| |||||||||||| ||||||| |||| |||| |||||||  ||||||||||    
T  17156037 aataacattcatgtcacgtttagtaatcttaagtagactatacaagtgatgaggccgttgggatattctaaccta 17156111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 38083820 - 38083924
Alignment:
Q  29 cgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctgatcgcatggcgatcct 128  Q
    ||||||||||||||||||||| ||||||| |||| | || |||| ||  |||||||||||| | || |||| ||||| |||||||| ||| || ||||||    
T  38083820 cgtttagttatcttaagtagactatacaagtgatgatgccgttgagacattctaacctagtcggttatcaagctgcatctgctgattgcacggtgatcct 38083919  T
Q  129 tacgt 133  Q
    |||||    
T  38083920 tacgt 38083924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8319282 - 8319343
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgat 62  Q
    ||||||||| | |||||||||||||||||||||| ||||||||| |||| ||| ||||||||    
T  8319282 tgttggatattaaataacattcatgtcacgtttaattatcttaaatagactatgcaactgat 8319343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 8446066 - 8446106
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattat 53  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  8446066 aataacattcatgtcatgtttagttatgttaagtagattat 8446106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 19908544 - 19908631
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaag-ttctaaccta 87  Q
    |||| |||| ||||||||| | ||||| |||||| |||||||| ||||| ||||||| || | |||||||||||| | ||||||||||    
T  19908544 tgtttgatattgaataacagtaatgtcgcgtttatttatcttaggtagactatacaagtgttgaggctgttgggacgtttctaaccta 19908631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 21325574 - 21325672
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaa 99  Q
    ||||||||| | ||||||| ||||||| | |||| ||||||||||| || |||||||  ||| |||  ||||||| ||| ||||||| ||| |||||||    
T  21325574 tgttggatattaaataacagtcatgtcgcttttatttatcttaagttgactatacaagcgatgaggtcgttgggacgttttaacctaattggttgtcaa 21325672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 41508602 - 41508735
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagtt-ctaacctagttgtttgtcaa 99  Q
    ||||||||| | ||||||| | ||||||| |||| |||||||| ||||||||||||| |||  |||| |||| || ||| |||||||| | | | | |||    
T  41508602 tgttggatattaaataacagtaatgtcacatttatttatcttaggtagattatacaagtgacgaggccgttgtgacgttactaacctaatcggtcgccaa 41508701  T
Q  100 actgcaactgctgatcgcatggcgatccttacgt 133  Q
     ||||| ||| ||||| || || |||||||||||    
T  41508702 gctgcatctgttgatcacacggtgatccttacgt 41508735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 12805745 - 12805653
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgca 105  Q
    ||||||||||||||| |||||| |||| ||||||||| |||| || |||| |||  ||||||  |||||||| || | | ||||||| |||||    
T  12805745 aataacattcatgtcgcgtttatttatattaagtagactatataagtgatgaggtcgttgggctgttctaacgtattcggttgtcaagctgca 12805653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 2670 - 2549
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagtt-gtttgtcaaactgcaactgct 111  Q
    ||||||||||| ||| |||||||||||||| |||||| | ||||| |||| |||| ||| ||| |||||||||||||| |||  ||||  |||| |||||    
T  2670 aataacattcaggtcgcgtttagttatctttagtagactgtacaaatgatgaggccgttaggacgttctaacctagttggttcatcaagttgcacctgct 2571  T
Q  112 gatcgcatggcgatccttacgt 133  Q
    |||||| ||| |||||||||||    
T  2570 gatcgcctggtgatccttacgt 2549  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 29027732 - 29027849
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaa 100  Q
    |||| |||||| ||||||||||||||| ||||||||||||||||||||| |||| || ||||   |  ||||||| ||||||||||||| |  ||||||     
T  29027732 tgttagataataaataacattcatgtcgcgtttagttatcttaagtagactataaaagtgatggcgtcgttgggacgttctaacctagtcgggtgtcaag 29027831  T
Q  101 ctgcaactgctgatcgca 118  Q
    ||||| ||| ||||||||    
T  29027832 ctgcacctgttgatcgca 29027849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 25885313 - 25885193
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctg 112  Q
    ||||||||| ||| | | |||||||||||| |||  | ||||||| |||| |||| ||||||| |||||||||  |||| |||| || ||||||||||||    
T  25885313 aataacatttatgccgcatttagttatctttagttaactatacaagtgatgaggccgttgggatgttctaacccggttggttgtaaagctgcaactgctg 25885214  T
Q  113 atcgcatggcgatccttacgt 133  Q
    |||||| || |||||||||||    
T  25885213 atcgcacggtgatccttacgt 25885193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 32085709 - 32085829
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctg 112  Q
    ||||||||||||||| |||||||||||||||||||||  |||||| |||| || | |||| || ||||| ||| ||| | || |||| |||||  |||||    
T  32085709 aataacattcatgtcgcgtttagttatcttaagtagacaatacaagtgatgagaccgttgtgacgttctgaccaagtcgattttcaagctgcacttgctg 32085808  T
Q  113 atcgcatggcgatccttacgt 133  Q
    |||||| || |||||||||||    
T  32085809 atcgcacggtgatccttacgt 32085829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28606041 - 28605986
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattataca 56  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||    
T  28606041 tgttggataataaataacatttatgtcacgtttagttatcttaagtagactataca 28605986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 25887744 - 25887633
Alignment:
Q  23 atgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaag-ttctaacctagttgtttgtcaaactgcaactgctgatcgcatgg 121  Q
    ||||| |||||| |||||||| ||||||||||||| |||| |||||||||||| | | |||||||| |   ||||||| ||||| ||||||||  || ||    
T  25887744 atgtcgcgtttatttatcttaggtagattatacaagtgatgaggctgttgggatgctactaacctaatcagttgtcaacctgcacctgctgattacacgg 25887645  T
Q  122 cgatccttacgt 133  Q
     |||||||||||    
T  25887644 tgatccttacgt 25887633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 26667533 - 26667607
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttggga 75  Q
    ||||||||||| ||||| ||  ||||| |||||| ||||||||  |||||||||||| |||| ||||| ||||||    
T  26667533 tgttggataataaataatataaatgtcgcgtttatttatcttagatagattatacaagtgatgaggctcttggga 26667607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 55099 - 55195
Alignment:
Q  3 ttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaa 99  Q
    ||||||||| ||||||||||||||| |||||||| ||| |||||| | ||||||| |||| |||| ||||||| || |||||||||| | |||||||    
T  55099 ttggataataaataacattcatgtcgcgtttagtcatcctaagtatactatacaagtgatgaggccgttgggacgtcctaacctagtcggttgtcaa 55195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 22755759 - 22755889
Alignment:
Q  3 ttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaact 102  Q
    ||||||| | |||||||||||||||| ||||| |||||||||||||| ||||||| |||| |||  ||||| | ||| ||||||| |   ||||||| ||    
T  22755759 ttggatattaaataacattcatgtcatgtttatttatcttaagtagactatacaagtgatgaggtcgttggaacgttttaacctaatcagttgtcaagct 22755858  T
Q  103 gcaactgctgatcgcatggcgatccttacgt 133  Q
    ||| || ||||| ||| || |||||||||||    
T  22755859 gcatctactgattgcacggtgatccttacgt 22755889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 24266806 - 24266734
Alignment:
Q  17 acattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagt 89  Q
    |||||||||||| |||||||||||||||||||| |||| || |||| |||| ||||||| |||||||| ||||    
T  24266806 acattcatgtcatgtttagttatcttaagtagactatataagtgatgaggccgttgggacgttctaacttagt 24266734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 24343437 - 24343365
Alignment:
Q  17 acattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagt 89  Q
    |||||||||||| |||||||||||||||||||| |||| || |||| |||| ||||||| |||||||| ||||    
T  24343437 acattcatgtcatgtttagttatcttaagtagactatataagtgatgaggccgttgggacgttctaacttagt 24343365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 34487880 - 34488065
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctg 112  Q
    ||||||||||||||  | ||||||||||||||||||| ||| ||| ||||  ||| ||||| | ||||||| ||||| | ||||||| || || ||||||    
T  34487880 aataacattcatgttgcttttagttatcttaagtagactattcaagtgatggggccgttggaacgttctaatctagtcggttgtcaagctacacctgctg 34487979  T
Q  113 atcgcatggcgatccttacgtnnnnnnntctatattatctcggttgatctcgatttat-ccactgatggctaattgcacctgatgat 198  Q
     ||||| |  |||||||||||       |||||| ||||||||||||||| | | ||| || | ||||||||||||||| |||||||    
T  34487980 ttcgcacgatgatccttacgt-acggggtctatactatctcggttgatcttggtctatccctccgatggctaattgcacttgatgat 34488065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 24265298 - 24265203
Alignment:
Q  38 atcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctgatcgcatggcgatccttacgt 133  Q
    |||||||||||| ||||||| |||| |||  ||| ||| ||||||||||||| | ||||||| |||||  ||||||| ||| || |||||||||||    
T  24265298 atcttaagtagactatacaagtgatgaggtcgtttggacgttctaacctagtcggttgtcaacctgcacatgctgattgcacggtgatccttacgt 24265203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 24341929 - 24341834
Alignment:
Q  38 atcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctgatcgcatggcgatccttacgt 133  Q
    |||||||||||| ||||||| |||| |||  ||| ||| ||||||||||||| | ||||||| |||||  ||||||| ||| || |||||||||||    
T  24341929 atcttaagtagactatacaagtgatgaggtcgtttggacgttctaacctagtcggttgtcaacctgcacatgctgattgcacggtgatccttacgt 24341834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 23388718 - 23388644
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttggga 75  Q
    ||||||||||| ||||| ||  ||||| |||||| |||||||| ||||| ||||||| |||| |||| |||||||    
T  23388718 tgttggataataaataatataaatgtcgcgtttatttatcttaggtagactatacaagtgatgaggccgttggga 23388644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 18208103 - 18208034
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttcta 82  Q
    ||||||||||||||| |||||| ||| | ||||| || ||||||| ||||||||  ||||||| ||||||    
T  18208103 aataacattcatgtcgcgtttatttagcctaagttgactatacaagtgataaggtcgttgggacgttcta 18208034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 89707 - 89633
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaaccta 87  Q
    ||||||||||||||| | ||||||||||||||||||| |||  || |||| |||  ||||||| |||||||||||    
T  89707 aataacattcatgtcgcatttagttatcttaagtagactatctaagtgatgaggtcgttgggacgttctaaccta 89633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 974 - 1094
Alignment:
Q  13 aataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttgggaagttctaacctagttgtttgtcaaactgcaactgctg 112  Q
    ||||||||||||||| |||||| ||||||||| |||| |||| || |||| ||    ||| || |||||||| |||| | ||||||| ||| | || |||    
T  974 aataacattcatgtcgcgtttaattatcttaattagactataaaagtgatgagatcattgagacgttctaacttagtcggttgtcaagctgaacctactg 1073  T
Q  113 atcgcatggcgatccttacgt 133  Q
    ||| || ||||||||||||||    
T  1074 atcacacggcgatccttacgt 1094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 3750 - 3824
Alignment:
Q  1 tgttggataatgaataacattcatgtcacgtttagttatcttaagtagattatacaactgataaggctgttggga 75  Q
    ||||||||||| ||||| ||  ||||| |||||| |||||||| ||||| ||||||| |||| |||| |||||||    
T  3750 tgttggataataaataatataaatgtcgcgtttatttatcttaggtagactatacaagtgatgaggccgttggga 3824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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