View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_177 (Length: 203)
Name: NF1773_high_177
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_177 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 3e-96; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 10968640 - 10968821
Alignment:
| Q |
1 |
tgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaa |
100 |
Q |
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| T |
10968640 |
tgaacaaggtgattttggttgacgagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaa |
10968739 |
T |
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| Q |
101 |
ggaattaatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaa |
182 |
Q |
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| T |
10968740 |
ggaattaatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaa |
10968821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 10982590 - 10982771
Alignment:
| Q |
1 |
tgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaa |
100 |
Q |
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| T |
10982590 |
tgaacaaggtgattttggttgaggagatgaaggttgctttggaattgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcaaattaa |
10982689 |
T |
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| Q |
101 |
ggaattaatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaa |
182 |
Q |
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| T |
10982690 |
ggaattaatggactccgataaggggaaagagattagacaaattattttcaagatgaaaataagtgctaaagaggcaagagaa |
10982771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 11002820 - 11002996
Alignment:
| Q |
1 |
tgaacaaggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaa |
100 |
Q |
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||||||| |||||||||||||||| |||||||| ||||||||||| || | |||||| | |||||||||||||||| ||||| ||||| || |||| |
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| T |
11002820 |
tgaacaaaatgattttggttgaggaaatgaaggtggctttggaactaaatgggtcaaaaaaagggtttgtgagtggaaatgagttgggggagagagttaa |
11002919 |
T |
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| Q |
101 |
ggaattaatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaa |
177 |
Q |
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| T |
11002920 |
ggagttgatggaatcagaaaaagggaaagagattagagagacaattttgaagatgaaaacaagtgctaaggaggcaa |
11002996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 180
Target Start/End: Original strand, 11079996 - 11080140
Alignment:
| Q |
36 |
gctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaagggaaagagatta |
135 |
Q |
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||||||||| |||| || |||||||| ||||||||||||| || ||||| ||||| || ||||||| || ||||| || || || ||||||||| ||| |
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| T |
11079996 |
gctttggaattgaatgagtcaaaagatgggtttgtgagtgaaaatgagttgggggagagagttaaggagttgatggaatcagaaaaggggaaagaggtta |
11080095 |
T |
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| Q |
136 |
ggaaaattattttcaagatgaaaataagtgctaaagaggcaagag |
180 |
Q |
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| T |
11080096 |
gagagacaattttgaagatgaaaataagtgctaaggaagcaagag |
11080140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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