View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_25 (Length: 566)
Name: NF1773_high_25
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_25 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 10 - 566
Target Start/End: Complemental strand, 2745545 - 2744988
Alignment:
| Q |
10 |
agatgaagatgaaagaaactacactgagaatgtcaaagcttgacatacttgcaggagggatgtgaaaagtggaaattttagtctccattgcagcaccttg |
109 |
Q |
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| T |
2745545 |
agatgaagatgaaggaaactacactgagaatgtcaaagcttgacatacttgcaggagggatgtgaaaagtggaaattttagtctccattgcagcaccttg |
2745446 |
T |
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| Q |
110 |
ttccacaaagagtgatgccatttgactgaagacaacagagaataatatagtgcataaccaaattgggagtaatcttaatatgcatttcacttcttctact |
209 |
Q |
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| T |
2745445 |
ttccacaaagagtgatgccatttgactgaagacaacagagaataatatagtgcataaccaaattgggagtaatcttaatatgcatttcacttcttctact |
2745346 |
T |
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| Q |
210 |
tgtgtcacagttgatagaaaccatggactgcatttattttcttccatttgcttcaaatcttttggtgtaataaatgctgctttatctaaaaacctagcaa |
309 |
Q |
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| T |
2745345 |
tgtgtcacagttgatagaaaccatggactgcatttattttcttccatttgcttcaaatcttttggtgtaataaatgctgctttatctaaaaacctagcaa |
2745246 |
T |
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| Q |
310 |
aattaggttaaattccattagtgacaattcatcatcaaaattgaacctatacaaaacataataatcaagactaaaatataaagccatgtgattattttat |
409 |
Q |
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| T |
2745245 |
aattaggttaaattccattagtgacaattcatcatcaaaattgaacctatacaaaacataataatcaagactaaaatataaagtcatgtgattattttaa |
2745146 |
T |
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| Q |
410 |
gcaatcatataacaattatacaacctatgatcttgacnnnnnnnnnnnnnnnnnnnnnnnntgttctatgttcaagatttttcattttcagcatcatata |
509 |
Q |
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| T |
2745145 |
gcaatcatataacaattatacaacctatgatcttgactatatatacatatatatgatatattgttctatgttcaagatttttcattttcagcatcatata |
2745046 |
T |
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| Q |
510 |
ag-aaattcatatcattgtgttacatatacggattaaaatcatatatagttttaaatc |
566 |
Q |
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| T |
2745045 |
agaaaattcatatcattgtgttacatatacgaattaaaatcatatatagttttaaatc |
2744988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 211
Target Start/End: Complemental strand, 40743850 - 40743734
Alignment:
| Q |
95 |
cattgcagcaccttgttccacaaagagtgatgccatttgactgaagacaacagagaataatatagtgcataaccaaattgggagtaatcttaatatgcat |
194 |
Q |
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| T |
40743850 |
cattgcagcaccttgctccacaaaaagggaagccatctgagtgaaaactactgagtagattattgtgcaaagccaaattggaagaagtcttagtatgcat |
40743751 |
T |
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| Q |
195 |
ttcacttcttctacttg |
211 |
Q |
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| T |
40743750 |
tttacttcttcaacttg |
40743734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 8469791 - 8469730
Alignment:
| Q |
159 |
gtgcataaccaaattgggagtaatcttaatatgcatttcacttcttctacttgtgtcacagt |
220 |
Q |
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| T |
8469791 |
gtgcataaccaaactggcaatagtctcaaaatacatttcacttcttcaacttgtgtcacagt |
8469730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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