View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_27 (Length: 564)
Name: NF1773_high_27
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 12 - 545
Target Start/End: Original strand, 6992526 - 6993059
Alignment:
| Q |
12 |
agaagcaaaggttaaatttctctggacataaaacattctacactcttccaaatttctctggtttgaaatcatctgtaggcaatttctggctaaagcaaca |
111 |
Q |
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| T |
6992526 |
agaagcaaaggttaaatttctctggacataaaacattctacactcttccaaatttctctggtttgaaatcatctgtaggcaatttctggctaaagcaaca |
6992625 |
T |
|
| Q |
112 |
tcactaagactaccaccatcaccttgcacatcaccttccagataattactggacaaatcaatcgttttaatcttgttcataaaaccattcacaggtccat |
211 |
Q |
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| T |
6992626 |
tcactaagactaccaccatcaccttgcacatcaccttccagataattactggacaaatcaatcgttttaatcttgttcataaaaccattcacaggtccat |
6992725 |
T |
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| Q |
212 |
aaaacaaattgtttgatagattgaatatgccacctgagctaacatttaaaccagacaattttggtagtggatcagtgagactgttgtctgatacatcaaa |
311 |
Q |
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| T |
6992726 |
aaaacaaattgtttgatagattgaatatgccacctgagctaacatttaaaccagacaattttggtagtggatcagtgagactgttttctgatacatcaaa |
6992825 |
T |
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| Q |
312 |
tattagcaacttaggcattgacaacaaactacccggcaacggcccagaaagagaattcatactaagatcgagttcaaccaactttgaaagattacctagc |
411 |
Q |
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| T |
6992826 |
tattagcaacttaggcattgacaacaaactacccggcaacggcccagaaagagaattcatactaagatcgagttcaaccaactttgaaagattacctagc |
6992925 |
T |
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| Q |
412 |
tgagagggaagcgaagaagtgaaagaattgttagaaaggttcaaattttgaagatttgaaagggtacctagttcaggtggaatagagccagataaataat |
511 |
Q |
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| T |
6992926 |
tgagagggaagcgaagaagtgaaagaattgttagaaaggttcaaattttgaagatttgaaagggtacctagttcaggtggaatagagccagataaataat |
6993025 |
T |
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| Q |
512 |
tattagaaagatcaagccttgtaatgttaccgag |
545 |
Q |
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| T |
6993026 |
tatttgaaagatcaagccttgtaatgttaccgag |
6993059 |
T |
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