View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_3 (Length: 833)
Name: NF1773_high_3
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 309 - 817
Target Start/End: Original strand, 52216109 - 52216617
Alignment:
| Q |
309 |
ttacatgggcatcaatgaacaaaacacaagataataaattcaaaattgcaaagatgcaagagaagtctctgattctgattacttagaggcttttgaagac |
408 |
Q |
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| T |
52216109 |
ttacacgggcatcaatgaaacaaacacaagataataaattcaaaattacaaagatgcaagagaagtctctgattctgattacttagaggcttttgaagac |
52216208 |
T |
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| Q |
409 |
tcatcattttgttgtttttgttctctctctaatcttgaattaccatattgacatctttactctatccaattaaaaatgtctttgaatacaatctccagat |
508 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
52216209 |
tcttcattttgttgtttttgttctctctctaatcttgaattaccatattgacatctttcctctatccaattaaaaatgtctttgaatacaatctccaaat |
52216308 |
T |
|
| Q |
509 |
tttcaggttgatctccatacaataaaccatgcctcatcccagggtacaatttcagtgtcttatctttgcttgatgcgacttcatgtaattgtttgctcac |
608 |
Q |
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| T |
52216309 |
tttcaggtggctcaccatacaataaaccatgccacattccagggtacaatttcagtgtcttatctttgcttgatgccacttcatgtaattgtttgctcac |
52216408 |
T |
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| Q |
609 |
tgatggatcagtcactctatcttcctcaccatgtaaaatcaaaaaaggaagtgaaacttcatctagtgtttcctcaatttttgtagcaaccctgctaagt |
708 |
Q |
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| T |
52216409 |
tgatggatcagtcactctatcttcctcaccatgtaaaatcaaaaaaggaagtgaaacttcatctagtgtttcctcaatttttgtagcaaccctgctaagt |
52216508 |
T |
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| Q |
709 |
tcataacctgttctcaaacgaggtttacctttgaagcaatattgattttccctaatctgcaattcataaataaaaactttcaatatataaatctataaca |
808 |
Q |
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| T |
52216509 |
tcataacctgttctcaaacgaggtttacctttgaagcagtattgatttgctctaatctgcaattcataaataaaaactttcaatatataaatctataaca |
52216608 |
T |
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| Q |
809 |
tgtgtgaat |
817 |
Q |
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| T |
52216609 |
tgtgtgaat |
52216617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 578
Target Start/End: Original strand, 44348019 - 44348066
Alignment:
| Q |
531 |
taaaccatgcctcatcccagggtacaatttcagtgtcttatctttgct |
578 |
Q |
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| T |
44348019 |
taaaccatgccacattccagggtacaatttaattgtcttatctttgct |
44348066 |
T |
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