View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_32 (Length: 519)
Name: NF1773_high_32
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 16 - 482
Target Start/End: Original strand, 51487341 - 51487809
Alignment:
| Q |
16 |
gtattcaatttacaggtttggagaaaccaatgatccagtgtaaacatatgttagaaatccaactgggaatgtacannnnnnnagttagttgattaggttc |
115 |
Q |
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| T |
51487341 |
gtattcaatttacaggtttggagaaaccaatgatccagtgtaaacatatgttagaaatccaactgggaatgtacatttttttagttagttgattacgttc |
51487440 |
T |
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| Q |
116 |
ggtaatttcatgttctttttagcaactgtaggaatggttccatattgtattttatctggcgcaccttgatttggtacatctgaaacattatttaccgact |
215 |
Q |
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| T |
51487441 |
ggtaatctcatgttctttttagcaactgtaggaatggttccatattgtattttatctggcgcaccttgatttgggacatctgaaacattatttaccgact |
51487540 |
T |
|
| Q |
216 |
tgttttgtaatgctgtgtatttaagtgtccctaactcgtatacctagatgctagttcatgctcacatcaaattcttggtttgattcaagtttaccggcag |
315 |
Q |
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| T |
51487541 |
tgttttgtaatgctgtgtatttaagtgtccctaactcgtatacctagatgctagttcatgctcacatcaaattcttggtttgattcaagtttaccggcag |
51487640 |
T |
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| Q |
316 |
atgcgattaatttccgaatgcatgatgatgagattatatgttgcccttaaatttaatgcagcatgttttgcaaaatgtgggaattgcttttttgatgtca |
415 |
Q |
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| T |
51487641 |
atgcgattaatttccgaatgcatgatgatgagattctatgttgcccttaaatttaatgcagcatgttttgcaaaatgtgggaattgcttttttgatgtca |
51487740 |
T |
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| Q |
416 |
tgtcctgtgattgttattgtcatactaata--tataaagtacagttgagcctttagtgaaagaaactat |
482 |
Q |
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| T |
51487741 |
tgtcctgtgaatgtttttgtcatactaatactaataaagtacagttgagcctttagtgaaagaaactat |
51487809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 513
Target Start/End: Original strand, 51488700 - 51488734
Alignment:
| Q |
479 |
ctatatcgacagaaactcgatacttccctatgtta |
513 |
Q |
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| T |
51488700 |
ctatatcgacagaaactcgatacttccctatgtta |
51488734 |
T |
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