View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_high_34 (Length: 501)
Name: NF1773_high_34
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 13886891 - 13887235
Alignment:
| Q |
18 |
ataaattgttcgaaaggcagatatacgcatttaaggggttgaagaaagtatggaataactaataggattacgtaaatta-----------gaggcaagtg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
13886891 |
ataaattgttcgaaaggcagatatacgcatttaaggggttgaagaaagtatggaataactaataggattacgtaaaatccaagggtaattgaggcaagtg |
13886990 |
T |
|
| Q |
107 |
aatcttcaagagtgagaaaatgatcactcaaaaagttgaagaggttatggtgaagtaactaaacatcataaggtagttggtaagaaagtgagtctcctcg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13886991 |
aatcttcaagagtgagaaaatgatcactccaaaagttgaagaggttatggtgaagtaactaaacatcataaggtagttggtaagaaagtgagtctcctcg |
13887090 |
T |
|
| Q |
207 |
aatttgggtatgtataatcactctagtttggttgttgctagttttgctccacatatcactagacactttgtattcatttcaacaatatctggcatatgca |
306 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13887091 |
aatttgggtatgtataatcactctaggttggttgtttctaattttgctccacatatcactagacactttgtattcatttcaacaatatctggcatatgca |
13887190 |
T |
|
| Q |
307 |
agtgttcaatgtgtcttcaaactccttctttcaatgcagttttta |
351 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13887191 |
agtgttcaacgtgtcttcaaactccttctttcaatgcagttttta |
13887235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 489
Target Start/End: Original strand, 13887395 - 13887444
Alignment:
| Q |
438 |
ctcagtggatagaattacattcattagatgttttccttgcttttcatgatat |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | |||||||||||||| |
|
|
| T |
13887395 |
ctcagtggatagaattacattcattagatg--ttcttggcttttcatgatat |
13887444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University