View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_41 (Length: 467)
Name: NF1773_high_41
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 14 - 345
Target Start/End: Original strand, 28894781 - 28895115
Alignment:
| Q |
14 |
atcaatggtttgaatttgaagagaaggagctcacttttgagctttgctatcggtaaagaagccaatgacaactctttctcggtataataatttcttattg |
113 |
Q |
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| T |
28894781 |
atcaatagtttgaatttgaagagaaggaactcacttttgagctttgctttcggtaaagaagccaatgacaactctttctcggtataataatttcttattg |
28894880 |
T |
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| Q |
114 |
ttgcaacagnnnnnnnccttcaaaaatgagttctgtttagattttgggctccattgaaagtgaagatattttgaaagcatacttaaatgtaaaatatgtt |
213 |
Q |
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| T |
28894881 |
ttgcaacagtttttttccttcaaaaatgagttctgtttagattttgggctccattgaaagtgaagatattttgaaagcatactcaaatataaaatatgtt |
28894980 |
T |
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| Q |
214 |
catttatgcaatttagaaaactttgaggagacaaatattttatactgttgaaggcgtgt---gtgtacgacacaacacaacttgtgtgttatgattgtct |
310 |
Q |
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| T |
28894981 |
catttatgcaatttagaaaactttgaggagacaaatattttatactgttgaaggcgtgtctggtgtacgacacaacacaacttgtgtgttatgattgtct |
28895080 |
T |
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| Q |
311 |
gacactaatacattagttacattcaattactttca |
345 |
Q |
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| T |
28895081 |
gacactaatacattagttacattcaattactttca |
28895115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 28895188 - 28895222
Alignment:
| Q |
418 |
catagtccataggagcaacttttttcctatatagt |
452 |
Q |
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| T |
28895188 |
catagttcataggagcaacttttttcctatatagt |
28895222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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