View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_45 (Length: 452)
Name: NF1773_high_45
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_45 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 36634777 - 36635228
Alignment:
| Q |
1 |
atgttacatatgttgatatctttgccataaaattggacctcattgcaacctactcaaaacatggtaagtataactagaaaaatttcattgttgcttcatc |
100 |
Q |
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| T |
36634777 |
atgttacatatgttgatatctttaccataaaattggacctcattgcaaactactcaaaacatggtaagtataactagaaaaatttcattgttgcttcatc |
36634876 |
T |
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| Q |
101 |
taaattcagcttatatttccgttacagtaaaacctattattgctgttcaagtcattttcctttctaacatgtcactacttgatgggttaaacaatattaa |
200 |
Q |
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| T |
36634877 |
taaattcagcttatatttccgttacagtaaaacctattattgctgttcaagtcattttcctttctaacatgtcactacttgatgggttaaacaatgttaa |
36634976 |
T |
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| Q |
201 |
atttgtatcattatttgtttgcagggtttgaacaaccttttatggcttgctgtggatatggaggtccgccatttaactatgacagtcgcgtttcttgtgg |
300 |
Q |
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| T |
36634977 |
atttgtatcattatttgtttgcagggtttgaacaaccttttatggcttgctgtggatatggaggtccgccatttaactatgacagtcgcgtttcttgtgg |
36635076 |
T |
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| Q |
301 |
actaacaacaacgatcttgaatgggaccacaattacagcaaaaggttgcaatgatagcggtgtgtatgtaagctgggacgggactcattacactgaggct |
400 |
Q |
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| T |
36635077 |
actaacaacaacgatcttgaatgggaccacaattacagcaaaaggttgcaatgatagcggtgtgtatgtaagctgggacgggactcattacactgaggct |
36635176 |
T |
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| Q |
401 |
tcaaatcaatatgttgcatcacaaattctcaccagaaactactccaacactg |
452 |
Q |
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| T |
36635177 |
tcaaatcaatatgttgcatcacaaattctcaccagaaactactccaacactg |
36635228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 196 - 432
Target Start/End: Original strand, 36639662 - 36639899
Alignment:
| Q |
196 |
attaaatttgtatcattatttgtttgcagggtttgaa-----caaccttttatggcttgctgtggatatggaggtccgccatttaactatgacagtcgcg |
290 |
Q |
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| T |
36639662 |
attaaatttgtatggctatttgtttgcagggtttgaattgaacagccgattatggcttgttgtggatatggaggcccgccattgaactatgacagtcgcg |
36639761 |
T |
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| Q |
291 |
tttcttgtggactaacaacaacgatcttgaatgggaccacaattacagcaaaaggttgcaatgatagcggtgtgtatgtaagctgggacgggactcatta |
390 |
Q |
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| T |
36639762 |
ttttttgtgg---agaaacaaaggtcttaaatggcaccatagttacagccaaaggttgcaataatagtagtgtgtatg-aagctgggacggagctcattt |
36639857 |
T |
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| Q |
391 |
cactgaggcttcaaatcaatatgttgcatcacaaattctcac |
432 |
Q |
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| T |
36639858 |
taccgaggccaaaaatcgatatgttgcatcacaaattctcac |
36639899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 36639545 - 36639626
Alignment:
| Q |
1 |
atgttacatatgttgatatctttgccataaaattggacctcattgcaacctactcaaaacatggtaagtataactagaaaaa |
82 |
Q |
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| T |
36639545 |
atgttacatatgttgatatctttaccataaaattagacctcattgcaaactactcacaacatggtaagtatatctagcaaaa |
36639626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 36636708 - 36636765
Alignment:
| Q |
394 |
tgaggcttcaaatcaatatgttgcatcacaaattctcaccagaaactactccaacact |
451 |
Q |
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| T |
36636708 |
tgaggctgcaaatcgatatgttgcatcataaattttcaccgaaaattactccaacact |
36636765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 218 - 432
Target Start/End: Complemental strand, 46936902 - 46936691
Alignment:
| Q |
218 |
tttgcagggtttgaacaaccttttatggcttgctgtggatatggaggtccgccatttaactatgacagtcgcgtttcttgtggactaacaacaacgatct |
317 |
Q |
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||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||| |||||||||||| | || ||||||| |||| ||| || || |
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| T |
46936902 |
tttgcagggtttgaacaacctattatggcatgttgtggatatggaggtccaccattgaactatgacagtagagtcacttgtggg--aaca-caaagacct |
46936806 |
T |
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| Q |
318 |
tgaatgggaccacaattacagcaaaaggttgcaatgatagcggtgtgtatgtaagctgggacgggactcattacactgaggcttcaaatcaatatgttgc |
417 |
Q |
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| T |
46936805 |
tcaatggaaccacaattacagcaaaaggttgtaatgatagttctgagtatatcaactgggacggaattcattacactgagactgcaaatcaatatgttgc |
46936706 |
T |
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| Q |
418 |
atcacaaattctcac |
432 |
Q |
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|||||| |||||||| |
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| T |
46936705 |
atcacagattctcac |
46936691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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