View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_47 (Length: 446)
Name: NF1773_high_47
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_47 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 14 - 430
Target Start/End: Original strand, 40222186 - 40222603
Alignment:
| Q |
14 |
atcataccactgtatccagtacatagtcctacttcatcttgaaatctcacatttccatagcaaaatctgaagcaacagctaattaattagaaccatttta |
113 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40222186 |
atcataccactgtagccagtacatagtcctacttcatcttgaaatgtcacatttccatagcaaaatctgaagcaatagctaattaattagaaccatttta |
40222285 |
T |
|
| Q |
114 |
tagcccc-ctcatatataattgtactggacatgcgcatattgaaccacatatatgacatcaacgtgtaatttattttatactatcaatcaatcataatcg |
212 |
Q |
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||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40222286 |
tagcccccctcatatataattgtacataacacgcgcatattgaaccacatatatgacatcaacgtgtaatttcttttatactatcaatcaatcataatcg |
40222385 |
T |
|
| Q |
213 |
tcagatcatttgacttttaacgaaccttatttccaaggtagcccatgatgccggtaccaacgcgagacacttttaaattgccaacgtggttgcgataatc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222386 |
tcagatcatttgacttttaacgaaccttatttccaaggtagcccatgatgccggtaccaacgcgagacacttttaaattgccaacgtggttgcgataatc |
40222485 |
T |
|
| Q |
313 |
ggcgcgtacccacacgcacaagaagataccaaccatttgcttgcttgctactagactaaagcgttgcttttgatttgggatttcattgtttgaggtgttt |
412 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40222486 |
ggcgcgtacccacacgcacaagaagataccgaccatttgcttgcttgctactaggctaaagcgtttcttttgatttgggatttcattgtttgaggtgttt |
40222585 |
T |
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| Q |
413 |
agagcttgatgaataagg |
430 |
Q |
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| T |
40222586 |
agagcttgatgaataagg |
40222603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 39338417 - 39338380
Alignment:
| Q |
185 |
attttatactatcaatcaatcataatcgtcagatcatt |
222 |
Q |
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|||||||||||||||||||| |||||||||| |||||| |
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| T |
39338417 |
attttatactatcaatcaattataatcgtcaaatcatt |
39338380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 4076111 - 4076069
Alignment:
| Q |
180 |
aatttattttatactatcaatcaatcataatcgtcagatcatt |
222 |
Q |
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||||| ||||| |||||||||||||||||||||| |||||||| |
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| T |
4076111 |
aattttttttacactatcaatcaatcataatcgttagatcatt |
4076069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 36886013 - 36886051
Alignment:
| Q |
184 |
tattttatactatcaatcaatcataatcgtcagatcatt |
222 |
Q |
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||||||| ||||||||||||||||||||||||| ||||| |
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| T |
36886013 |
tattttacactatcaatcaatcataatcgtcaggtcatt |
36886051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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