View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_50 (Length: 433)
Name: NF1773_high_50
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_50 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Original strand, 31776587 - 31776998
Alignment:
| Q |
12 |
ataatatactacatgtcttttgtgtgagttttagttatggttggagaatgcccaacacttgttgtgtcaatttggatgtagttggctctaatttctctat |
111 |
Q |
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| T |
31776587 |
ataatatactacatgtcttttgtgtgagttttagttatggttggagaatgtccaacacttgttgtgtcaatttggatttagttggctctaatttctctat |
31776686 |
T |
|
| Q |
112 |
gaagaaaatattttaaccgtaaaaaatattgttttcgnnnnnnnataatttaaggaccgggtttaaaggtaagattattaaaaccttagttttagacctc |
211 |
Q |
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| T |
31776687 |
gaagaaaatattttaaccgtaaaaaatattgttttcgtttttttataatttaaggaccgggtttaaaggtaagattattaaaaccttagttttagacctc |
31776786 |
T |
|
| Q |
212 |
ccaacaaattttttattttcagtagttcttatgaataaataactttagatgtggaaacaatattgaaattttaggaaacatatattaaaacnnnnnnnna |
311 |
Q |
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| T |
31776787 |
ccaacaaattttttattttcagtagttcttatgaataaataactttagatgtggaaacaatattgaaattttaggaaacatatattaaaactttttttta |
31776886 |
T |
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| Q |
312 |
agcctgattgacccacttaatgggaaaaaacttgatttttgttcttgttgttaagtctcattaactattgaaaattattgaactaatgttttataatatt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
31776887 |
agcctgattgacccacttaatgggaaaaaacttgatttttgttcttgttgttaagtctcattaactattgaaaattattgaactaatgtgttctaatatt |
31776986 |
T |
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| Q |
412 |
attgtccctttg |
423 |
Q |
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| T |
31776987 |
atagtccttttg |
31776998 |
T |
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