View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_high_53 (Length: 426)
Name: NF1773_high_53
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_53 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 278 - 426
Target Start/End: Original strand, 26578547 - 26578695
Alignment:
| Q |
278 |
caaactctcgaaatttcttgaaatctctacattattccaccactttcacatccatgcatgtcactttgattaaacactccgcagaaccctctaaatcctt |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26578547 |
caaactctcgaaatttcttgaaatctctacattattccaccactttcacatccatgcatgtcactttgattaaacactccgcagaaccctctaaatcctt |
26578646 |
T |
|
| Q |
378 |
cctcccttttctccaaaattcacgaacatcatctatagtgaccaaatca |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26578647 |
cctcccttttctccaaaattcacgaacatcatctatagtgaccaaatca |
26578695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 26577920 - 26577985
Alignment:
| Q |
114 |
cttttcacttcagaaatatattttgtgaggttgaatcaagtctaactacgatgtttaagaccaaac |
179 |
Q |
| |
|
|||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
26577920 |
cttttcactttagcaacatattttgtgaggttgaatcaagtctaactacgatctttaagatcaaac |
26577985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 26577718 - 26577787
Alignment:
| Q |
4 |
ttttttattgaaatttggcatagactattctatattattctaaaaagaaatgacaatagtcattgaaaat |
73 |
Q |
| |
|
||||||| | ||||||| || |||||||||||||||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
26577718 |
ttttttactaaaatttgacacagactattctatattattttagaaagaaatgacaataatcattgaaaat |
26577787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 26578493 - 26578526
Alignment:
| Q |
242 |
cacatttccattttgaacaacgaatccttgtcat |
275 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
26578493 |
cacatttccattttcaacaacgaatccttgtcat |
26578526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University