View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_high_56 (Length: 415)

Name: NF1773_high_56
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_high_56
NF1773_high_56
[»] chr6 (5 HSPs)
chr6 (65-410)||(33822810-33823156)
chr6 (246-375)||(24572341-24572469)
chr6 (234-375)||(24577707-24577847)
chr6 (95-146)||(26525048-26525099)
chr6 (219-305)||(31789699-31789785)
[»] chr3 (2 HSPs)
chr3 (76-353)||(29566604-29566883)
chr3 (246-352)||(11309717-11309823)
[»] chr4 (2 HSPs)
chr4 (228-395)||(4625478-4625646)
chr4 (344-388)||(39635567-39635611)
[»] chr1 (2 HSPs)
chr1 (79-395)||(38232627-38232940)
chr1 (246-352)||(6303647-6303753)
[»] chr7 (3 HSPs)
chr7 (278-400)||(33810868-33810990)
chr7 (99-205)||(33810686-33810792)
chr7 (300-352)||(7041920-7041972)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 65 - 410
Target Start/End: Original strand, 33822810 - 33823156
Alignment:
Q  65 tcaacgtcatgagttaagacaaaatcgagagttcgaaaatcattcgtaatacaaacaaggatcccttaatttcctagcaataaaccatctttaagaagta 164  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| |||    
T  33822810 tcaacgtcatgagttaagataaaatagagagttcgaaaatcattcgtaatataaataaggattccttaatttcctagcaataaaccatctttaagaggta 33822909  T
Q  165 actttgatgacttttacaatctcctttgactcccaagttttagnnnnnnnn-taacctcattttgagctttccaaattttccaaattgttgaatgtcaaa 263  Q
    | ||||||||||||||||||||| | |||||||||||||||||         |||||||||||  ||||| | ||||||| |||||||||||||||||||    
T  33822910 attttgatgacttttacaatctcttctgactcccaagttttagaagaaaaaataacctcatttcaagcttcctaaatttttcaaattgttgaatgtcaaa 33823009  T
Q  264 tgagtgtgagccctttttgatgttttatactcaaagaagatggtgaaaaatatttaaggagtgaaacaatattaccgggtaaaatcaccctcgttctaat 363  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823010 tgagtgtgagccctttttgatgttttatactcaaagaagatgatgaaaaatatttaaggagtgaaacaatattaccgggtaaaatcaccctcgttctaat 33823109  T
Q  364 ccatttaaaaattgcataacaaatccttccaataaagtattatctac 410  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||    
T  33823110 ccatttaaaaattgcataacaaatccttccaacaaagtagtatctac 33823156  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 375
Target Start/End: Complemental strand, 24572469 - 24572341
Alignment:
Q  246 aaattgttgaatgtcaaatgagtgtgagccctttttgatgttttatactcaaagaagatggtgaaaaatatttaaggagtgaaacaatattaccgggtaa 345  Q
    ||||||||| ||| ||||||||||| ||||| ||| |||||||| ||  ||||||||||| |||||| | |  ||||||||||||||||||||| |||||    
T  24572469 aaattgttgcatgccaaatgagtgtaagcccctttcgatgttttttagccaaagaagatgatgaaaattgtg-aaggagtgaaacaatattaccaggtaa 24572371  T
Q  346 aatcaccctcgttctaatccatttaaaaat 375  Q
    ||||||||  ||||  ||| ||||||||||    
T  24572370 aatcacccctgttccgatcaatttaaaaat 24572341  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 375
Target Start/End: Complemental strand, 24577847 - 24577707
Alignment:
Q  234 tccaaattttccaaattgttgaatgtcaaatgagtgtgagccctttttgatgttttatactcaaagaagatggtgaaaaatatttaaggagtgaaacaat 333  Q
    ||||||||||| ||||||||| ||| ||||||||||| ||||| |||  ||||||| ||   |||||| ||| |||| ||| || ||||||||||||| |    
T  24577847 tccaaattttctaaattgttgcatgccaaatgagtgtaagcccctttcaatgttttttaacaaaagaatatgatgaataatgttgaaggagtgaaacagt 24577748  T
Q  334 attaccgggtaaaatcaccctcgttctaatccatttaaaaat 375  Q
    | || | ||||||||||||||||||||  |||||||||||||    
T  24577747 a-tatccggtaaaatcaccctcgttcttttccatttaaaaat 24577707  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 26525099 - 26525048
Alignment:
Q  95 gttcgaaaatcattcgtaatacaaacaaggatcccttaatttcctagcaata 146  Q
    ||||||||||||||||||  | ||||||||| ||| ||||||||||||||||    
T  26525099 gttcgaaaatcattcgtagcataaacaaggaccccctaatttcctagcaata 26525048  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 305
Target Start/End: Original strand, 31789699 - 31789785
Alignment:
Q  219 cctcattttgagctttccaaattttccaaattgttgaatgtcaaatgagtgtgagccctttttgatgttttatactcaaagaagatg 305  Q
    |||||||| ||||| ||||||||||||||||  ||| ||  ||||||||||| ||||| ||| ||| |||| || |||||| |||||    
T  31789699 cctcatttcgagctgtccaaattttccaaatccttgcataccaaatgagtgtaagcccctttcgatattttttagtcaaagcagatg 31789785  T

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Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 76 - 353
Target Start/End: Original strand, 29566604 - 29566883
Alignment:
Q  76 agttaagacaaaatcgagagttcgaaaatcattcgtaatacaaacaaggatccc--ttaatttcctagcaataaaccatctttaagaagtaactttgatg 173  Q
    |||||||| ||| | ||| |||||||||||||||||||||||||||||||||||  | | |||  |||||||||||||||| ||||  || |||||||||    
T  29566604 agttaagataaagtagagggttcgaaaatcattcgtaatacaaacaaggatccccctaatttttttagcaataaaccatctctaagtggtgactttgatg 29566703  T
Q  174 acttttacaatctcctttgactcccaagttttag-nnnnnnnntaacctcattttgagctttccaaattttccaaattgttgaatgtcaaatgagtgtga 272  Q
    ||||||||||||||||  ||||||||| ||||||         ||||| ||||   | ||| |||||||||||||||  ||   || ||||| || || |    
T  29566704 acttttacaatctcctccgactcccaaattttagaagaaaaattaaccccattccaaacttcccaaattttccaaatgattacgtgccaaataagagtaa 29566803  T
Q  273 gccctttttgatgttttatactcaaagaagatggtgaaaaatatttaaggagtgaaacaatattaccgggtaaaatcaccc 353  Q
    |||||||| |||||||| | || |||||||||| ||||||  ||||||  ||| ||||||||||| ||| |||||||||||    
T  29566804 gcccttttcgatgtttt-ttcttaaagaagatgatgaaaacaatttaaatagtaaaacaatattatcggataaaatcaccc 29566883  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 352
Target Start/End: Original strand, 11309717 - 11309823
Alignment:
Q  246 aaattgttgaatgtcaaatgagtgtgagccctttttgatgttttatactcaaagaagatggtgaaaaatatttaaggagtgaaacaatattaccgggtaa 345  Q
    ||||||||| ||| ||||||||  | ||||| ||| || ||||| ||  ||||||||||| || |||||| | |||||||||||||||||| ||||||||    
T  11309717 aaattgttgcatgccaaatgaggttaagcccctttcgacgttttttagccaaagaagatgatggaaaatagtcaaggagtgaaacaatattgccgggtaa 11309816  T
Q  346 aatcacc 352  Q
    |||||||    
T  11309817 aatcacc 11309823  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 228 - 395
Target Start/End: Complemental strand, 4625646 - 4625478
Alignment:
Q  228 gagctttccaaattttccaaattgttgaatgtcaaatgagtgtgagccctttttgatgttttata--ctcaaagaagatggtgaaaaatatttaaggagt 325  Q
    |||||| | |||||| | ||||||||| |||||||||||| || ||||||||| |||||||| |   | ||||||| ||| ||||||||||| |||||||    
T  4625646 gagcttccgaaatttgctaaattgttgcatgtcaaatgagagtaagcccttttcgatgttttttttccccaaagaatatgatgaaaaatattaaaggagt 4625547  T
Q  326 gaaacaatattaccgggtaaaatcaccctcgttctaatccatttaaaaattgcataacaaatccttccaa 395  Q
    |||||||||||| | |||||||||| ||  | || |||||||||||||||||||||  ||||||||||||    
T  4625546 gaaacaatattaac-ggtaaaatcatccctgctccaatccatttaaaaattgcatacaaaatccttccaa 4625478  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 39635611 - 39635567
Alignment:
Q  344 aaaatcaccctcgttctaatccatttaaaaattgcataacaaatc 388  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||    
T  39635611 aaaatcaccctcgttccgatccatttaaaaattgcatatcaaatc 39635567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 79 - 395
Target Start/End: Original strand, 38232627 - 38232940
Alignment:
Q  79 taagacaaaatcgagagttcgaaaatcattcgtaatacaaacaaggatcccttaatttcctagcaataaaccatctttaagaagtaactttgatgacttt 178  Q
    ||||||||||  ||| |||| |||| ||||  ||||||||||||||||||  |||||| ||| |||||||||||||| |||| || |||||||| ||||     
T  38232627 taagacaaaagagagggttcaaaaaccatttataatacaaacaaggatccactaattttcta-caataaaccatcttcaagaggtgactttgataacttc 38232725  T
Q  179 tacaatctcctttgactcccaagttttagnnnnnnnntaacctcattttgagctttccaaattttccaaattgttgaatgtcaaatgagtgtgagccctt 278  Q
    |||||||||||  | ||||||| ||||||        ||| |  |||   ||||| | ||||||||| |||||||| ||| |||||||  || ||| | |    
T  38232726 tacaatctcctccgtctcccaa-ttttagaagaaaaataaacctattccaagcttccaaaattttcc-aattgttgcatgccaaatgaaggtaagctcat 38232823  T
Q  279 tttgatgttttatactcaaagaagatggtgaaaaatatttaaggagtgaaacaatattaccgggtaaaatcaccctcgttctaatccatttaaaaattgc 378  Q
    || |||||||| ||  |||| || ||| ||||||||| | |||||||||||||||||    |||||||||||||  | |||   ||||||||||| ||||    
T  38232824 ttcgatgttttttagccaaaaaatatgatgaaaaatagtcaaggagtgaaacaatatagttgggtaaaatcaccaccattcctttccatttaaaatttgc 38232923  T
Q  379 ataacaaatccttccaa 395  Q
    ||| |||||||||||||    
T  38232924 ataccaaatccttccaa 38232940  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 352
Target Start/End: Original strand, 6303647 - 6303753
Alignment:
Q  246 aaattgttgaatgtcaaatgagtgtgagccctttttgatgttttatactcaaagaagatggtgaaaaatatttaaggagtgaaacaatattaccgggtaa 345  Q
    ||||||||| ||| |||||||| || ||||| ||| || ||||| ||  ||||||||||| || |||||| | |||||||||||||||||| | ||||||    
T  6303647 aaattgttgcatgccaaatgagggtaagcccctttcgacgttttttagccaaagaagatgatggaaaatagtcaaggagtgaaacaatattgcggggtaa 6303746  T
Q  346 aatcacc 352  Q
    |||||||    
T  6303747 aatcacc 6303753  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 278 - 400
Target Start/End: Original strand, 33810868 - 33810990
Alignment:
Q  278 ttttgatgttttatactcaaagaagatggtgaaaaatatttaaggagtgaaacaatattaccgggtaaaatcaccctcgttctaatccatttaaaaattg 377  Q
    |||||||||||| ||  ||||||||| | ||||||||| |   ||||||||||||||||||  ||||||||||| ||||||| |||||||||  |||||     
T  33810868 ttttgatgttttttaaccaaagaagaggatgaaaaatagtcgcggagtgaaacaatattacttggtaaaatcacactcgttccaatccatttttaaattc 33810967  T
Q  378 cataacaaatccttccaataaag 400  Q
    |||| ||||||||| ||||||||    
T  33810968 catatcaaatccttgcaataaag 33810990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 33810686 - 33810792
Alignment:
Q  99 gaaaatcattcgtaatacaaacaaggatcccttaatttcctagcaataaaccatctttaagaagtaactttgatgacttttacaatctcctttgactccc 198  Q
    ||||| ||||| |||||||||||| |||| | ||||||||||| |||| || |||| ||||| || ||||||||  ||| || |||||||| || || ||    
T  33810686 gaaaaccattcttaatacaaacaatgatcgcctaatttcctagaaatatactatctctaagaggtgactttgattgcttatagaatctcctctgccttcc 33810785  T
Q  199 aagtttt 205  Q
    |||||||    
T  33810786 aagtttt 33810792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 7041972 - 7041920
Alignment:
Q  300 aagatggtgaaaaatatttaaggagtgaaacaatattaccgggtaaaatcacc 352  Q
    |||||| || |||||| | ||||||||||| |||||| |||||||||||||||    
T  7041972 aagatgatggaaaatagtcaaggagtgaaaaaatattgccgggtaaaatcacc 7041920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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