View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_high_58 (Length: 411)

Name: NF1773_high_58
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_high_58
NF1773_high_58
[»] chr4 (15 HSPs)
chr4 (204-403)||(55261254-55261453)
chr4 (19-173)||(55261556-55261710)
chr4 (36-118)||(46734597-46734679)
chr4 (72-169)||(56337971-56338068)
chr4 (96-157)||(53569591-53569652)
chr4 (46-129)||(8081696-8081779)
chr4 (96-161)||(48029228-48029293)
chr4 (61-166)||(52731120-52731225)
chr4 (49-129)||(20543695-20543775)
chr4 (49-161)||(32348758-32348870)
chr4 (49-135)||(25124307-25124393)
chr4 (96-158)||(34104919-34104981)
chr4 (96-134)||(48498550-48498588)
chr4 (72-126)||(52814100-52814154)
chr4 (95-160)||(9690001-9690066)
[»] chr5 (6 HSPs)
chr5 (49-166)||(24177186-24177303)
chr5 (49-166)||(5909513-5909630)
chr5 (72-129)||(27679670-27679727)
chr5 (72-158)||(34337465-34337550)
chr5 (94-135)||(15440170-15440211)
chr5 (97-129)||(26904617-26904649)
[»] chr8 (5 HSPs)
chr8 (19-105)||(32095750-32095836)
chr8 (36-123)||(7671061-7671148)
chr8 (37-135)||(26658578-26658676)
chr8 (54-129)||(9492289-9492363)
chr8 (46-162)||(9510373-9510489)
[»] chr3 (13 HSPs)
chr3 (23-161)||(43171422-43171559)
chr3 (94-161)||(4963942-4964009)
chr3 (93-174)||(48743946-48744026)
chr3 (72-169)||(46189085-46189182)
chr3 (46-174)||(5789928-5790055)
chr3 (49-161)||(35216351-35216463)
chr3 (46-161)||(14306850-14306965)
chr3 (49-126)||(13700576-13700653)
chr3 (72-129)||(21548494-21548551)
chr3 (96-161)||(46249354-46249419)
chr3 (49-165)||(7935516-7935632)
chr3 (46-150)||(31674519-31674623)
chr3 (46-126)||(34829032-34829112)
[»] chr1 (9 HSPs)
chr1 (66-131)||(48380441-48380506)
chr1 (72-169)||(17823701-17823798)
chr1 (49-170)||(6092933-6093053)
chr1 (72-128)||(33150606-33150662)
chr1 (46-129)||(27394083-27394166)
chr1 (72-126)||(5287612-5287666)
chr1 (93-135)||(23765773-23765815)
chr1 (50-128)||(36379665-36379743)
chr1 (38-150)||(39187486-39187597)
[»] chr2 (7 HSPs)
chr2 (46-129)||(18634575-18634658)
chr2 (93-160)||(31265804-31265871)
chr2 (72-128)||(44941287-44941343)
chr2 (72-158)||(33280670-33280756)
chr2 (47-119)||(33584486-33584558)
chr2 (72-129)||(11195961-11196018)
chr2 (36-101)||(11547298-11547363)
[»] chr7 (6 HSPs)
chr7 (67-129)||(19512028-19512090)
chr7 (72-166)||(30802247-30802341)
chr7 (50-129)||(8753839-8753918)
chr7 (93-174)||(25944280-25944359)
chr7 (49-126)||(27096755-27096832)
chr7 (49-126)||(27181471-27181548)
[»] chr6 (5 HSPs)
chr6 (52-171)||(6936960-6937079)
chr6 (49-126)||(1364685-1364762)
chr6 (93-170)||(33095540-33095617)
chr6 (72-175)||(14586080-14586183)
chr6 (101-175)||(14620640-14620714)
[»] scaffold0057 (1 HSPs)
scaffold0057 (96-166)||(3430-3500)
[»] scaffold0048 (1 HSPs)
scaffold0048 (54-128)||(50909-50983)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 204 - 403
Target Start/End: Complemental strand, 55261453 - 55261254
Alignment:
Q  204 acttgaacatatacatacaaatgttatttttagtaaattgttgagggacaaatggtataaattggggtgtctttttcccatctttgatccttgtcccgtt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55261453 acttgaacatatacatacaaatgttatttttagtaaattgttgagggacaaatggtataaattggggtgtctttttcccatctttgatccttgtcccgtt 55261354  T
Q  304 ggaactccaaatgagacaatgctcatacgataatcttcatttacaagtataaattgacatccctaacctaaatatatgatcacatgtttgagagaattat 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  55261353 ggaactccaaatgagacaatgctcatacgataatcttcatttacaagtataaattgacatccctaacctaaatatatgatcacatgtttgagagacttat 55261254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 55261710 - 55261556
Alignment:
Q  19 gtccaaactacaattagagagcttattgaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagat 118  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  55261710 gtccaaactacaattagagagcttattgaaaaagttaaattccattcttattcgtggctgaaagctaacaaagccacttttgtgtatggttctcagagat 55261611  T
Q  119 ggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgtaatt 173  Q
    |||||| |||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  55261610 ggtggttggacccgttactttgactgggtatcgactgacctttatttttgtaatt 55261556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 46734597 - 46734679
Alignment:
Q  36 agagcttattgaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagat 118  Q
    ||||||||| || ||| |||||| | ||| ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  46734597 agagcttatagacaaatttaaatataattcttattggtggctgaaagctaacaatgtcacttttgtgtatggttttcagagat 46734679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 56337971 - 56338068
Alignment:
Q  72 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgt 169  Q
    |||||| ||||||||||| | ||||||||| ||||||||||| |||||||||| ||||  |||||||||  |||||||| |||||||| | |||||||    
T  56337971 gtggctaaaagctaacaatgccacttttgtttatggttctcaaagatggtggttggaccggttgctttgtttgggtatcgactgacctatgtttttgt 56338068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 53569652 - 53569591
Alignment:
Q  96 ttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgac 157  Q
    ||||||||| |||||||||||||||||||||||| | || |||||  |||||||||||||||    
T  53569652 ttttgtgtacggttctcagagatggtggtcggaccctttactttgtttgggtatcaactgac 53569591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 8081779 - 8081696
Alignment:
Q  46 gaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 129  Q
    ||||| ||||||| | | |||| || |||||||||||||||||| |||| |||||| |||||  |||| |||||||||||||||    
T  8081779 gaaaaggttaaatataactttttttggtggctgaaagctaacaatgtcaattttgtttatggcactcatagatggtggtcggac 8081696  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 48029293 - 48029228
Alignment:
Q  96 ttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgaccttt 161  Q
    ||||||||| |||||||| |||||||||||||||   ||| ||||  |||||||||||||||||||    
T  48029293 ttttgtgtacggttctcaaagatggtggtcggaccatttgttttgtttgggtatcaactgaccttt 48029228  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 52731225 - 52731120
Alignment:
Q  61 catttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctt 160  Q
    ||||| |||| ||||||||||||||| || | ||||||||||| ||||  |  |||||||||||||||| |||||| |||  |||||||   ||||||||    
T  52731225 catttctattggtggctgaaagctaataatgccacttttgtgtttggtagttggagatggtggtcggacccgttgcattgcttgggtattggctgacctt 52731126  T
Q  161 tatttt 166  Q
    | ||||    
T  52731125 tgtttt 52731120  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 20543775 - 20543695
Alignment:
Q  49 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 129  Q
    ||||||| |||||||| ||  | |||||| ||||||||||||| || |||| |||||||| | || |||||||||||||||    
T  20543775 aaagttagatttcattctttatggtggcttaaagctaacaaagccaattttatgtatggtacccaaagatggtggtcggac 20543695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 32348758 - 32348870
Alignment:
Q  49 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggta 148  Q
    ||||| |||||||| |  |||| ||||||||||||||| |  | ||  |||||||| |||||||||||||||||||||||  | ||| ||||  ||||||    
T  32348758 aaagtaaaatttcactcgtattggtggctgaaagctaagaccgccatgtttgtgtacggttctcagagatggtggtcggatcctttgatttgtttgggta 32348857  T
Q  149 tcaactgaccttt 161  Q
    || ||| ||||||    
T  32348858 tcgactaaccttt 32348870  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 25124393 - 25124307
Alignment:
Q  49 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttg 135  Q
    |||||||| ||||||||||||| |||| |||| | |||  | || | ||||||||||| || |||||||||||| |||||| |||||    
T  25124393 aaagttaagtttcatttttattggtggttgaaggttaatgatgttagttttgtgtatgattgtcagagatggtgatcggacccgttg 25124307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 34104981 - 34104919
Alignment:
Q  96 ttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacc 158  Q
    |||||| ||||||||||||||||||||||||||| | ||| | ||  |||||||| |||||||    
T  34104981 ttttgtatatggttctcagagatggtggtcggaccctttgttatgtttgggtatcgactgacc 34104919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 48498550 - 48498588
Alignment:
Q  96 ttttgtgtatggttctcagagatggtggtcggactcgtt 134  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  48498550 ttttgtgtatggtactcagagatggtggtcggacccgtt 48498588  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 52814154 - 52814100
Alignment:
Q  72 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcg 126  Q
    |||||| ||||| |||||| ||||||||||||| |||||||| || |||||||||    
T  52814154 gtggcttaaagccaacaaaatcacttttgtgtacggttctcaaagttggtggtcg 52814100  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 9690066 - 9690001
Alignment:
Q  95 cttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctt 160  Q
    ||||||||||||||||||| |||||||||||| || | || |||||  |||||||| || ||||||    
T  9690066 cttttgtgtatggttctcaaagatggtggtcgaaccctttactttgtttgggtatcgaccgacctt 9690001  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 24177303 - 24177186
Alignment:
Q  49 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggta 148  Q
    ||||||||| || ||| ||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||  ||| ||    
T  24177303 aaagttaaacttaattcttattggtggctgaaagctaacaaagccacttttatgtatggttctcagagatggtggttggactcgttgttttgcttggata 24177204  T
Q  149 tcaactgacctttatttt 166  Q
    || |||||||||||||||    
T  24177203 tcgactgacctttatttt 24177186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 166
Target Start/End: Original strand, 5909513 - 5909630
Alignment:
Q  49 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggta 148  Q
    ||||| |||||||| |  |||| |||||||||||| || || | |||||||||||| | |||||||||||||||||||||| | ||| ||||  ||||||    
T  5909513 aaagtaaaatttcactcgtattggtggctgaaagcaaataacgccacttttgtgtacgattctcagagatggtggtcggaccctttgatttgtttgggta 5909612  T
Q  149 tcaactgacctttatttt 166  Q
    |||||| |||||| ||||    
T  5909613 tcaactaacctttgtttt 5909630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 27679670 - 27679727
Alignment:
Q  72 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 129  Q
    |||||| || ||||| || |||||||||||||| |||||||||| |||||||||||||    
T  27679670 gtggcttaaggctaataatgtcacttttgtgtacggttctcagaaatggtggtcggac 27679727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 34337550 - 34337465
Alignment:
Q  72 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacc 158  Q
    |||| ||||||| ||||||  ||||||||| | |||||||||||||||| ||||||||  |||||||||  || ||||| |||||||    
T  34337550 gtggttgaaagccaacaaaaccacttttgtatttggttctcagagatgg-ggtcggaccagttgctttgtttgagtatcgactgacc 34337465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 15440170 - 15440211
Alignment:
Q  94 acttttgtgtatggttctcagagatggtggtcggactcgttg 135  Q
    |||||||||||||||| |||||||||||||||| ||| ||||    
T  15440170 acttttgtgtatggttgtcagagatggtggtcgaactagttg 15440211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 26904617 - 26904649
Alignment:
Q  97 tttgtgtatggttctcagagatggtggtcggac 129  Q
    |||||||||||||||||||| ||||||||||||    
T  26904617 tttgtgtatggttctcagagttggtggtcggac 26904649  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 32095750 - 32095836
Alignment:
Q  19 gtccaaactacaattagagagcttattgaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtat 105  Q
    |||||| |||||| ||| |||||||||||||||||||||||| ||| ||||| || ||| ||||||||| |||||||||||| ||||    
T  32095750 gtccaagctacaagtagggagcttattgaaaaagttaaatttaattcttattggtagctaaaagctaacgaagtcacttttgggtat 32095836  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 7671148 - 7671061
Alignment:
Q  36 agagcttattgaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtgg 123  Q
    |||| |||| ||||| ||||||| | ||| ||||| |||| ||||||| ||||||| ||||||||||||||||| | |||||||||||    
T  7671148 agagattatagaaaaggttaaatataattcttattggtggttgaaagcaaacaaagccacttttgtgtatggttttaagagatggtgg 7671061  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 135
Target Start/End: Complemental strand, 26658676 - 26658578
Alignment:
Q  37 gagcttattgaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttg 135  Q
    |||||||| ||||| || ||||||||||| || | |||| ||| |||||| || |||||||| || ||||||| ||||   ||||||||||||||||||    
T  26658676 gagcttatggaaaaggtaaaatttcatttatactggtggttgagagctaataatgtcactttagtatatggttgtcagcagtggtggtcggactcgttg 26658578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 9492363 - 9492289
Alignment:
Q  54 taaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 129  Q
    ||||||||||| ||  | |||||| || |||||||| ||||| |||||||| | ||||||||||||||||||||||    
T  9492363 taaatttcattctttatggtggcttaaggctaacaatgtcacatttgtgtacg-ttctcagagatggtggtcggac 9492289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 9510489 - 9510373
Alignment:
Q  46 gaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgg 145  Q
    |||||||| || ||||| | || || |||||| |||||||| || | |||||||||| | ||| |||| ||||||||||||||| | ||  | ||  |||    
T  9510489 gaaaaagtaaagtttcactctttttggtggcttaaagctaataaggccacttttgtgcagggtactcacagatggtggtcggaccctttattatgtttgg 9510390  T
Q  146 gtatcaactgaccttta 162  Q
    ||||| |||||||||||    
T  9510389 gtatcgactgaccttta 9510373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 43171422 - 43171559
Alignment:
Q  23 aaactacaattagagagcttattgaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtg 122  Q
    ||||| |||| ||| || |||| ||||| ||||||| | |||| |||| |||| |||| || ||||||| ||||||||||||||| ||||||||||||||    
T  43171422 aaactccaatcagaaagattatggaaaaggttaaatataatttctattggtggttgaa-gcaaacaaagccacttttgtgtatggctctcagagatggtg 43171520  T
Q  123 gtcggactcgttgctttgactgggtatcaactgaccttt 161  Q
    ||||||  |||| |||||  ||||||||  |||||||||    
T  43171521 gtcggatccgttactttgcttgggtatcggctgaccttt 43171559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 4964009 - 4963942
Alignment:
Q  94 acttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgaccttt 161  Q
    ||||||||||| |||||||||||||||||||||||| | || ||||| ||||||||| ||||||||||    
T  4964009 acttttgtgtacggttctcagagatggtggtcggaccctttactttgtctgggtatcgactgaccttt 4963942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 48743946 - 48744026
Alignment:
Q  93 cacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgtaatta 174  Q
    |||||||||||| |  ||||||||||||||||||||| | || ||||| |||| |||| |||||||||| ||||||||||||    
T  48743946 cacttttgtgtacgactctcagagatggtggtcggaccctttactttgcctggttatcgactgaccttt-tttttgtaatta 48744026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 169
Target Start/End: Complemental strand, 46189182 - 46189085
Alignment:
Q  72 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgt 169  Q
    |||||| |||| |||||| |||| |||||| ||||||||||| ||||||||||||||  | |||||||   |||||||||| |||  ||| |||||||    
T  46189182 gtggctaaaagttaacaatgtcaattttgtttatggttctcaaagatggtggtcggatcccttgctttatttgggtatcaattgatttttgtttttgt 46189085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 5789928 - 5790055
Alignment:
Q  46 gaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgg 145  Q
    |||||||  ||||||||||| | || |||| | |||||||| ||   |||||||||||| || ||| |||||||||||| |||| | || ||||| ||||    
T  5789928 gaaaaagcaaaatttcatttgttttggtggttaaaagctaataacaccacttttgtgtacggctctgagagatggtggttggaccctttactttgtctgg 5790027  T
Q  146 gtatcaactgacctttatttttgtaatta 174  Q
    ||||  |||||||||| || |||||||||    
T  5790028 gtattgactgaccttt-ttattgtaatta 5790055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 35216351 - 35216463
Alignment:
Q  49 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggta 148  Q
    ||||||||||||||||| |  | |||||| || ||||| || | || ||||||||| ||| ||||||||||||||| |||| |  ||| |||  ||||||    
T  35216351 aaagttaaatttcatttgttatggtggcttaaggctaagaacgccaattttgtgtacggtactcagagatggtggttggaccctatgcattgtttgggta 35216450  T
Q  149 tcaactgaccttt 161  Q
    || ||||||||||    
T  35216451 tcgactgaccttt 35216463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 14306965 - 14306850
Alignment:
Q  46 gaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgg 145  Q
    |||||||  |||| |||||| | || |||| | |||||||| ||  ||| ||||||||| ||||||||||||||||||||| || | ||  ||||  |||    
T  14306965 gaaaaagcaaaatatcatttgttttggtggttaaaagctaataacatcaattttgtgtacggttctcagagatggtggtcgaaccctttattttgtttgg 14306866  T
Q  146 gtatcaactgaccttt 161  Q
    ||||| ||||||||||    
T  14306865 gtatcgactgaccttt 14306850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 13700576 - 13700653
Alignment:
Q  49 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcg 126  Q
    ||||| ||||||||||| |  | |||||| |||| ||||||| ||||||||||||| | |||||| || |||||||||    
T  13700576 aaagtaaaatttcatttcttgtggtggcttaaagttaacaaaatcacttttgtgtacgtttctcaaagttggtggtcg 13700653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 21548494 - 21548551
Alignment:
Q  72 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 129  Q
    |||| ||||||||||||||  ||||||||| | ||||||||||||||| || ||||||    
T  21548494 gtggttgaaagctaacaaaaccacttttgtatttggttctcagagatgatgatcggac 21548551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 46249354 - 46249419
Alignment:
Q  96 ttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgaccttt 161  Q
    ||||||||| ||||| || ||||||||||||||| | || |||||  |||||||| ||||||||||    
T  46249354 ttttgtgtacggttcccaaagatggtggtcggaccctttactttgtttgggtatcgactgaccttt 46249419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 7935632 - 7935516
Alignment:
Q  49 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggta 148  Q
    ||||| |||||||||| ||  | |||||| ||||| ||||||  |||||||||||| |||||||| || |||| |||| || | ||   ||| |||||||    
T  7935632 aaagtaaaatttcattctttgtggtggcttaaagccaacaaaaccacttttgtgtacggttctcaaagttggtagtcgaaccctttttattgtctgggta 7935533  T
Q  149 tcaactgacctttattt 165  Q
    || |||||| |||||||    
T  7935532 tcgactgacttttattt 7935516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 31674623 - 31674519
Alignment:
Q  46 gaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgg 145  Q
    |||||||| ||||| |||| ||  | |||||| |||||||  |||| ||  |||||||| |||| |||||| ||||||||||||||  |||||||  |||    
T  31674623 gaaaaagtaaaattacattgtttatggtggctaaaagctagtaaagccaaatttgtgtacggttatcagaggtggtggtcggactctatgctttgtttgg 31674524  T
Q  146 gtatc 150  Q
    |||||    
T  31674523 gtatc 31674519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 34829112 - 34829032
Alignment:
Q  46 gaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcg 126  Q
    ||||||||||||||||| |  | || |||||| |||||||| || | ||||||| |||| | |||||| ||||||||||||    
T  34829112 gaaaaagttaaatttcactccttttggtggcttaaagctaataaggccacttttatgtacgattctcaaagatggtggtcg 34829032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 48380506 - 48380441
Alignment:
Q  66 ttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactc 131  Q
    ||||| |||||| ||||||||||| | |||| |||||||||||||| |||||||||||||||||||    
T  48380506 ttattggtggctaaaagctaacaacgccactcttgtgtatggttcttagagatggtggtcggactc 48380441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 169
Target Start/End: Complemental strand, 17823798 - 17823701
Alignment:
Q  72 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgt 169  Q
    |||||| |||| ||| || ||||||||||| |  ||| |||| |||||||||| ||||||||| ||||| |||| |||| |||||||||| |||||||    
T  17823798 gtggctaaaagttaataatgtcacttttgttttaggtactcaaagatggtggttggactcgttactttgtctggatatcgactgacctttgtttttgt 17823701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 170
Target Start/End: Original strand, 6092933 - 6093053
Alignment:
Q  49 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggta 148  Q
    |||||||| |||||||  |||| |||| |||| ||||| || ||||||||||||| || || ||||||||||||||||||  |||||   ||  ||||||    
T  6092933 aaagttaagtttcattcatattggtggttgaa-gctaataatgtcacttttgtgtttgattgtcagagatggtggtcggatccgttgtaatgtttgggta 6093031  T
Q  149 tcaactgacctttatttttgta 170  Q
    || |||||||| | ||||||||    
T  6093032 tcgactgacctatgtttttgta 6093053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 33150662 - 33150606
Alignment:
Q  72 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcgga 128  Q
    |||||| |||||||||||||||| |||| |||| ||| |||| ||||||||||||||    
T  33150662 gtggcttaaagctaacaaagtcaattttatgtacggtactcaaagatggtggtcgga 33150606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 27394083 - 27394166
Alignment:
Q  46 gaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 129  Q
    ||||||||||| | |  || ||||| |||| |||| ||||| || ||||||||||| ||||| |||||| ||||||||||||||    
T  27394083 gaaaaagttaagtatacttcttattggtggttgaaggctaataatgtcacttttgtatatggctctcagtgatggtggtcggac 27394166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 5287666 - 5287612
Alignment:
Q  72 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcg 126  Q
    |||||| ||||| |||||| ||||||||||||| |||||||| || |||||||||    
T  5287666 gtggcttaaagccaacaaaatcacttttgtgtacggttctcaaagttggtggtcg 5287612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 23765815 - 23765773
Alignment:
Q  93 cacttttgtgtatggttctcagagatggtggtcggactcgttg 135  Q
    ||||||||||||||||||||| |||| |||||||||| |||||    
T  23765815 cacttttgtgtatggttctcaaagatagtggtcggacccgttg 23765773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 36379743 - 36379665
Alignment:
Q  50 aagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcgga 128  Q
    ||||||||||||||| ||  |  ||| | |||| ||| || ||||| |||||||| |||||||||||||||||||||||    
T  36379743 aagttaaatttcattctttataatggtttaaagttaataatgtcacatttgtgtacggttctcagagatggtggtcgga 36379665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 39187486 - 39187597
Alignment:
Q  38 agcttattgaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgct 137  Q
    ||||||| || |||||||||||||||| ||| | |||| |||| | ||| || ||||| ||||||||||||| || |  ||||||||||||  ||||| |    
T  39187486 agcttatggataaagttaaatttcattcttactggtggttgaaggataataatgtcac-tttgtgtatggttgtcggcaatggtggtcggatccgttgtt 39187584  T
Q  138 ttgactgggtatc 150  Q
    |||  ||||||||    
T  39187585 ttgtatgggtatc 39187597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 18634658 - 18634575
Alignment:
Q  46 gaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 129  Q
    |||||||||||||||||||| | || ||| || |||||||| ||   ||| ||||||||||| |||||||||||||||||||||    
T  18634658 gaaaaagttaaatttcatttgttttggtgacttaaagctaataataccacgtttgtgtatggctctcagagatggtggtcggac 18634575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 31265871 - 31265804
Alignment:
Q  93 cacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctt 160  Q
    |||||||||||||| |||||| ||||||||||||||| | || |||||  ||||||||||||||||||    
T  31265871 cacttttgtgtatgattctcaaagatggtggtcggaccctttactttgtttgggtatcaactgacctt 31265804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 44941287 - 44941343
Alignment:
Q  72 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcgga 128  Q
    |||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||||||    
T  44941287 gtggctaaaagctaacaatgtcacatttgtgtacggttcacagagatggtggtcgga 44941343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 33280756 - 33280670
Alignment:
Q  72 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacc 158  Q
    |||| ||||||||||||||| |||||||   | ||||||||| |||||||||||||||  |||||||||  ||| |||| |||||||    
T  33280756 gtggttgaaagctaacaaagccacttttccatttggttctcacagatggtggtcggacctgttgctttgtttggatatcgactgacc 33280670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 33584486 - 33584558
Alignment:
Q  47 aaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatg 119  Q
    |||| ||||||||| |||  | || ||||||||||||||| || | |||||||||||| ||||||||||||||    
T  33584486 aaaaggttaaattttattcgtttttgtggctgaaagctaataacgccacttttgtgtacggttctcagagatg 33584558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 11196018 - 11195961
Alignment:
Q  72 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 129  Q
    |||||| |||||||||||||||| |||| |||  ||| |||| |||||||||||||||    
T  11196018 gtggcttaaagctaacaaagtcaattttatgttcggtactcaaagatggtggtcggac 11195961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 11547298 - 11547363
Alignment:
Q  36 agagcttattgaaaaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgt 101  Q
    ||||||||| || ||||||||||||||||  |||| |||| |||| ||||| |||| |||||||||    
T  11547298 agagcttatggataaagttaaatttcattcatattggtggttgaaggctaataaagccacttttgt 11547363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 19512090 - 19512028
Alignment:
Q  67 tattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 129  Q
    |||| ||||||||||||||| || ||||  |||||||| ||||||||||||||||||||||||    
T  19512090 tattggtggctgaaagctaataacgtcatgtttgtgtacggttctcagagatggtggtcggac 19512028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 30802247 - 30802341
Alignment:
Q  72 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttt 166  Q
    ||||||||||||||| || | ||| |||||||| |||||||||||| ||||||||||| | ||| ||||  |||||||| ||| |||||| ||||    
T  30802247 gtggctgaaagctaataacgccacgtttgtgtacggttctcagagacggtggtcggaccctttgatttgtttgggtatcgactaacctttgtttt 30802341  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 8753839 - 8753918
Alignment:
Q  50 aagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggac 129  Q
    |||||||||||||||  |||| |||||| |||||||| || | ||  |||||||| |||| |||||||||||||||||||    
T  8753839 aagttaaatttcattcgtattggtggctcaaagctaaaaatgccatgtttgtgtacggttttcagagatggtggtcggac 8753918  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 25944280 - 25944359
Alignment:
Q  93 cacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgtaatta 174  Q
    |||||||||||| || |||||| ||||| |||| ||||| || ||||| |||||||| ||||||||||  ||||||||||||    
T  25944280 cacttttgtgtacggatctcagggatggaggtcagactctttactttgtctgggtatgaactgacctt--tttttgtaatta 25944359  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 27096832 - 27096755
Alignment:
Q  49 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcg 126  Q
    ||||||||||||||||  |  | |||||| ||||| ||||||  |||||||||||| |||||||| || |||||||||    
T  27096832 aaagttaaatttcattcgttgtggtggcttaaagccaacaaaaccacttttgtgtacggttctcaaagttggtggtcg 27096755  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 27181471 - 27181548
Alignment:
Q  49 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcg 126  Q
    ||||||||||||||||  |  | |||||| ||||| ||||||  |||||||||||| |||||||| || |||||||||    
T  27181471 aaagttaaatttcattcgttgtggtggcttaaagccaacaaaaccacttttgtgtacggttctcaaagttggtggtcg 27181548  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 6937079 - 6936960
Alignment:
Q  52 gttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatca 151  Q
    |||||||||||||  | || |||||||| |||||| || | || ||||||||| ||||||||||||||| |||| ||| |  || ||||  ||||||||     
T  6937079 gttaaatttcattcgttttggtggctgagagctaataacgccatttttgtgtacggttctcagagatggcggtcagaccctatgatttgtttgggtatcg 6936980  T
Q  152 actgacctttatttttgtaa 171  Q
    |||||||||| || ||||||    
T  6936979 actgacctttgttcttgtaa 6936960  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 1364762 - 1364685
Alignment:
Q  49 aaagttaaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcg 126  Q
    ||||||||||||||||  |||| |||||| |||||||| || ||||  ||| |||||| |||||| ||||||||||||    
T  1364762 aaagttaaatttcattcgtattggtggcttaaagctaaaaatgtcatgtttctgtatgattctcacagatggtggtcg 1364685  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 33095617 - 33095540
Alignment:
Q  93 cacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgta 170  Q
    |||||||||||| |||||||| ||||||||||||||| | ||| | || || |||||| ||||||| || ||||||||    
T  33095617 cacttttgtgtacggttctcaaagatggtggtcggaccctttgttatgtctaggtatcgactgaccattctttttgta 33095540  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 14586080 - 14586183
Alignment:
Q  72 gtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgtaa 171  Q
    |||||||||| |||| || | ||| |||||||||||| || ||||||||||||||||  | ||||||||  || ||||  | |||||||| ||| |||||    
T  14586080 gtggctgaaaactaataatgccacatttgtgtatggtgcttagagatggtggtcggatcctttgctttgtttgcgtattgattgacctttgtttctgtaa 14586179  T
Q  172 ttat 175  Q
    ||||    
T  14586180 ttat 14586183  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 14620640 - 14620714
Alignment:
Q  101 tgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttttgtaattat 175  Q
    ||||||||||| ||||||||||||||||  | ||||||||  || |||||||  ||||||| ||| |||||||||    
T  14620640 tgtatggttcttagagatggtggtcggatcctttgctttgtttgcgtatcaatcgacctttgtttctgtaattat 14620714  T

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Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 3430 - 3500
Alignment:
Q  96 ttttgtgtatggttctcagagatggtggtcggactcgttgctttgactgggtatcaactgacctttatttt 166  Q
    |||||| |||||||| || ||||||||||||||| ||||| ||||  |||||||| |||||||||| ||||    
T  3430 ttttgtttatggttcacatagatggtggtcggacccgttgatttgtttgggtatcgactgacctttgtttt 3500  T

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Target: scaffold0048 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 50909 - 50983
Alignment:
Q  54 taaatttcatttttattcgtggctgaaagctaacaaagtcacttttgtgtatggttctcagagatggtggtcgga 128  Q
    ||||||||||| ||  | |||||| || || ||||| | ||| |||||||| |||||||||||||||||||||||    
T  50909 taaatttcattctttatggtggcttaaggcaaacaaggccacatttgtgtaaggttctcagagatggtggtcgga 50983  T

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