View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_65 (Length: 391)
Name: NF1773_high_65
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_65 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 68 - 372
Target Start/End: Complemental strand, 41890497 - 41890191
Alignment:
| Q |
68 |
tgagaattatgtacagaagattatcatgtattagttgtacaagtactggctacaacagcattctactagatcaggttctgcagagttgttctgaagagga |
167 |
Q |
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| T |
41890497 |
tgagaattatgtacagaagattatcatgtattagttgtacaagtactagctacaacagcattcta---gatcaggttctgcagagttgttctgaagagga |
41890401 |
T |
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| Q |
168 |
attcaaccgtacgaagtttaaattaaagttatgtacagtaagatatgaaagcaaacattaaattgggttccttgactgcaaaggatatattcgatatcat |
267 |
Q |
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| T |
41890400 |
attcaaccgtacgaagtttaaattaaagttatgtacagtaagatatgaaagcaaacattaaattgggttccttgactgcaaaggatatattcgatatcat |
41890301 |
T |
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| Q |
268 |
t-----gtatccgtgcatcggtgatcaatgcatgcatgccattgccaacagtgttgtcaaactgatttcagcttataagtctaaaataaaaacgagaatg |
362 |
Q |
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| T |
41890300 |
tgtattgtatccgtgcatcggtgatcaatgcatgcatgccattgccaacagtgttgtcaaactgatttcagcttataagtcaaaaataaaaacgagaatg |
41890201 |
T |
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| Q |
363 |
cagtttactt |
372 |
Q |
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| T |
41890200 |
cagtttactt |
41890191 |
T |
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