View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_high_68 (Length: 387)
Name: NF1773_high_68
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_68 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 14705588 - 14705232
Alignment:
| Q |
19 |
aactaaggattctaaggaactaaagacgaccaagatgcgtcagttgggccgcaagtcctgcggccatatgtcaatggnnnnnnnggtccttttcctttat |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||| | | ||||||||| |||||||||||||||| ||||||||||||| || |
|
|
| T |
14705588 |
aactaagggttctaaggaactaaagacgaccaagatgtgtcagttgcgtcacaagtcctgtggccatatgtcaatggtttttttggtccttttccttcat |
14705489 |
T |
|
| Q |
119 |
taaattgtgttataacaagcagttttagttttattttctgttctggatcaattatggtgcaaggtgcaacttatgttaataactttttagtttagtttgt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14705488 |
taaattgtgttataacaagcagttttagttttagtttctgttctggatcaattatggtgtaaggtgcaacttatgttaataactttttagtttagtttgt |
14705389 |
T |
|
| Q |
219 |
gtgatgcaaagctgtgtcaaagggcaatgtccctnnnnnnnnnctataattgacttaaaaattttcttggtactcctatttttcttcattcatgattttg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14705388 |
gtgatgcaaagctgtgtcaaagggcaatgtccctaaaaaaaaactataattgacttaaaaaaattcttggtactcctatttttcttcattcatgatttta |
14705289 |
T |
|
| Q |
319 |
agtccctcgtatgaaggtttgggattct-tatttgtttgattacattattttgattc |
374 |
Q |
| |
|
|||| ||||||| ||| |||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
14705288 |
agtctctcgtattaagatttgggcttctatttttgtttgattacattattttgattc |
14705232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University