View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_high_69 (Length: 382)
Name: NF1773_high_69
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_69 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 135 - 274
Target Start/End: Complemental strand, 39732643 - 39732498
Alignment:
| Q |
135 |
aaaattaacaacgctcgtgaaaatatcgggatgagttttatcgtgatatttagcatttttc-----atagtaaaataggaa-gggtgtaacaagttttta |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| |
|
|
| T |
39732643 |
aaaattaacaacgctcgtgaaaatatcgggatgagttttatcgtgatatttagcatttttcttttcatagtaaaataggaaagggtgtgacaagttttta |
39732544 |
T |
|
| Q |
229 |
taagacataaagcttcaccgacttggaagtgcattgaattgtatat |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39732543 |
taagacataaagcttcaccgacttggaagtgcattgaattgtatat |
39732498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 273 - 373
Target Start/End: Complemental strand, 39732469 - 39732369
Alignment:
| Q |
273 |
atcagtcagaccgtctgatttgtgttgtttaataattaccaattgtgaaccaataaaaggtactgaagactgatctttcatccaccatattccagtataa |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39732469 |
atcagtcagaccgtctgatttgtgttgtttaataattaccaattgtgaaccaataaaaggtactgaagactgatctttcatccaccatattccagtataa |
39732370 |
T |
|
| Q |
373 |
t |
373 |
Q |
| |
|
| |
|
|
| T |
39732369 |
t |
39732369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 55 - 196
Target Start/End: Complemental strand, 34893991 - 34893851
Alignment:
| Q |
55 |
tccaattgttagtagcatgttaagcattgaagctatctcaataaataatggaagtaggtattttgtagtttataggtgtaaaaattaacaacgctcgtga |
154 |
Q |
| |
|
|||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34893991 |
tccaattgttagtatt-tgttaagcattgaagccatgtcaataaataatggaagtaggtattttgtagtttataggtgtaaaaattaacaacgctcgtga |
34893893 |
T |
|
| Q |
155 |
aaatatcgggatgagttttatcgtgatatttagcatttttca |
196 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
34893892 |
aaatatcgggatggattttgtcgctatatttagcatttttca |
34893851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University