View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_high_71 (Length: 376)
Name: NF1773_high_71
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_71 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 41613853 - 41613499
Alignment:
| Q |
14 |
cattaagctcattgtgaaagcccctaagacacaaagcaatgtgcccataatttttactctactatatgtgcaacttaagtccactttttccaacctgcat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41613853 |
cattaagctcattgtgaaagcccctaagacacaaagcaatgtgcccataatttttactctactatatgtgcaacttaagtccactttttccaacctgcat |
41613754 |
T |
|
| Q |
114 |
ttgcatatatgctttcattaacatttgaaaatgctatttataatatgatactttatacaaatcaaatcttacatctannnnnnngtaccattcaaatttt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
41613753 |
ttgcatatatgctttcattaacatttgaaaatgctatttataatatgatactttatacaaatcaaatcttacatctatttttttgtaccattcaaa-ttt |
41613655 |
T |
|
| Q |
214 |
atatagattatcatgtgcaccaacccttta-ttcttggtgttaaagaaaaactgtgaactcttgaagcctatgagaaaatagattattaccgaaaaagcc |
312 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41613654 |
atatagattattatgtgcaccaaccctttatttcttggtgttaaagaaaaattgtgaactcttgaagcctatgagaaaatagattattaccgaaaaagcc |
41613555 |
T |
|
| Q |
313 |
acgcgatgatgaagataaatcctggggcaaggtttggcatggctgttccctttgct |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41613554 |
acgcgatgatgaagataaatcctggggcaaggtttggcatggctgttcccattgct |
41613499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 3857996 - 3858066
Alignment:
| Q |
298 |
attaccgaaaaagccacgcgatgatgaagataaatcctggggcaaggtttggcatggctgttccctttgct |
368 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||| |||||||||||||||||||| || |||||| ||||| |
|
|
| T |
3857996 |
attacccaaaagtccatgcgatgatgaagataaaacctggggcaaggtttggcatagcagttcccattgct |
3858066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University