View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_high_73 (Length: 373)

Name: NF1773_high_73
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_high_73
NF1773_high_73
[»] chr4 (25 HSPs)
chr4 (17-236)||(23510205-23510424)
chr4 (17-236)||(34768925-34769144)
chr4 (17-191)||(54779935-54780109)
chr4 (17-236)||(35779900-35780119)
chr4 (17-166)||(10430979-10431128)
chr4 (28-201)||(47128482-47128659)
chr4 (197-342)||(9579133-9579278)
chr4 (197-342)||(9584828-9584973)
chr4 (197-342)||(48208705-48208850)
chr4 (197-342)||(10978362-10978507)
chr4 (197-342)||(23510494-23510639)
chr4 (203-342)||(34769221-34769360)
chr4 (197-342)||(47128242-47128386)
chr4 (17-124)||(2975650-2975757)
chr4 (197-304)||(54779732-54779839)
chr4 (197-318)||(35780190-35780311)
chr4 (203-299)||(10431127-10431223)
chr4 (19-74)||(38066697-38066752)
chr4 (265-303)||(10978539-10978577)
chr4 (265-303)||(47128418-47128456)
chr4 (265-303)||(48208882-48208920)
chr4 (265-303)||(54779871-54779909)
chr4 (265-303)||(9579063-9579101)
chr4 (265-303)||(9584758-9584796)
chr4 (265-303)||(35780120-35780158)
[»] chr6 (3 HSPs)
chr6 (17-236)||(19740594-19740812)
chr6 (197-342)||(19740883-19741028)
chr6 (265-303)||(19740813-19740851)
[»] chr2 (11 HSPs)
chr2 (17-236)||(34693611-34693830)
chr2 (17-236)||(34716023-34716242)
chr2 (37-201)||(40445408-40445572)
chr2 (197-345)||(34693392-34693540)
chr2 (197-345)||(34715804-34715952)
chr2 (197-318)||(29940240-29940361)
chr2 (235-313)||(40445272-40445347)
chr2 (265-303)||(34693572-34693610)
chr2 (265-303)||(34715984-34716022)
chr2 (197-236)||(29940130-29940169)
chr2 (265-303)||(29940170-29940208)
[»] chr8 (4 HSPs)
chr8 (25-236)||(41878640-41878851)
chr8 (17-303)||(45472560-45472835)
chr8 (197-344)||(41878423-41878569)
chr8 (265-303)||(41878601-41878639)
[»] chr3 (8 HSPs)
chr3 (25-236)||(3954250-3954461)
chr3 (197-342)||(3954532-3954676)
chr3 (197-271)||(8073728-8073802)
chr3 (17-74)||(54577872-54577929)
chr3 (265-303)||(3954462-3954500)
chr3 (197-236)||(8073618-8073657)
chr3 (265-303)||(8073658-8073696)
chr3 (288-318)||(8073802-8073832)
[»] chr1 (14 HSPs)
chr1 (17-236)||(21741279-21741498)
chr1 (24-201)||(4977238-4977415)
chr1 (56-236)||(50881129-50881309)
chr1 (17-201)||(5316255-5316437)
chr1 (203-342)||(5316014-5316153)
chr1 (201-342)||(21741573-21741714)
chr1 (17-156)||(23182309-23182450)
chr1 (203-342)||(50880804-50880942)
chr1 (197-345)||(4977579-4977734)
chr1 (197-303)||(23182180-23182286)
chr1 (265-303)||(4977441-4977479)
chr1 (265-303)||(21741499-21741537)
chr1 (203-236)||(4977407-4977440)
chr1 (203-236)||(50881019-50881052)
[»] chr5 (14 HSPs)
chr5 (41-236)||(30853740-30853935)
chr5 (17-201)||(27078689-27078873)
chr5 (197-340)||(16592495-16592638)
chr5 (197-342)||(27078448-27078593)
chr5 (70-201)||(23285335-23285466)
chr5 (197-336)||(22987125-22987264)
chr5 (197-342)||(30853525-30853669)
chr5 (197-304)||(23285566-23285673)
chr5 (113-236)||(22986932-22987054)
chr5 (17-68)||(23284983-23285034)
chr5 (265-303)||(22987055-22987093)
chr5 (265-303)||(30853701-30853739)
chr5 (265-303)||(23285496-23285534)
chr5 (203-236)||(23285458-23285491)
[»] scaffold0012 (1 HSPs)
scaffold0012 (19-74)||(182355-182410)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 23510205 - 23510424
Alignment:
Q  17 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23510205 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 23510304  T
Q  117 tttaacaaaaactcccaaaacaataaatatgcagaaatcaattattactaattccgttaataatcaaccaaatctttatcaatctttatcaatctctatt 216  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  23510305 tttaacaaaaactccgaaaacagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctttatcaatctctatt 23510404  T
Q  217 ttagcaatttcaacgttcaa 236  Q
    ||||||||||||||||||||    
T  23510405 ttagcaatttcaacgttcaa 23510424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 34768925 - 34769144
Alignment:
Q  17 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  |||||||||||||    
T  34768925 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattaacaacatatatgttatataaattcaattatacacataaatttgaataat 34769024  T
Q  117 tttaacaaaaactcccaaaacaataaatatgcagaaatcaattattactaattccgttaataatcaaccaaatctttatcaatctttatcaatctctatt 216  Q
    |||| ||||||||||||||| | ||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  34769025 tttagcaaaaactcccaaaatagtaaatatgctgaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctttatcaatctctatt 34769124  T
Q  217 ttagcaatttcaacgttcaa 236  Q
    |||||||||||||| |||||    
T  34769125 ttagcaatttcaacattcaa 34769144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 54780109 - 54779935
Alignment:
Q  17 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54780109 acaatgttgagattgaaccataaaataaaattaaaatataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 54780010  T
Q  117 tttaacaaaaactcccaaaacaataaatatgcagaaatcaattattactaattccgttaataatcaaccaaatct 191  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||    
T  54780009 tttaacaaaaactcccaaaacagtaaatatgcagaaatcaattattactatttctgttgataatcaaccaaatct 54779935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 35779900 - 35780119
Alignment:
Q  17 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaa-catatatgatatataaattcaattatacactgaaatttgaataa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35779900 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattatcaaacatatatgatatataaattcaattatacactgaaatttgaataa 35779999  T
Q  116 ttttaacaaaaactcccaaaacaataaatatgcagaaatcaattattactaattccgttaataatcaaccaaatctttatcaatctttatcaatctctat 215  Q
    ||||||||||| |||| |||||| |||||||||| ||||||||||  |||||||| ||||||||||||| | || ||| | |||||||||||||||||||    
T  35780000 ttttaacaaaa-ctcctaaaacagtaaatatgcataaatcaattaaaactaattctgttaataatcaactatattttttttaatctttatcaatctctat 35780098  T
Q  216 tttagcaatttcaacgttcaa 236  Q
    ||||||||||||||| |||||    
T  35780099 tttagcaatttcaacattcaa 35780119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 10430979 - 10431128
Alignment:
Q  17 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10430979 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 10431078  T
Q  117 tttaacaaaaactcccaaaacaataaatatgcagaaatcaattattacta 166  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  10431079 tttaacaaaaactcccaaaacagtaaatatgcataaatcaattattacta 10431128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 47128659 - 47128482
Alignment:
Q  28 attgaaccataaaataaaattaaaacataattagtaattagcaacatatatgata----tataaattcaattatacactgaaatttgaataattttaaca 123  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||    
T  47128659 attgaaccataaaataaaataaaaacataattagtaattagcaacatatatgatacatatataaattcaattatacactgaaatttgaataattttaaca 47128560  T
Q  124 aaaactcccaaaacaataaatatgcagaaatcaattattactaattccgttaataatcaaccaaatctttatcaatct 201  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||    
T  47128559 aaaactcccaaaacagtaaatatgcagaaatcaattattactacttctgttaataatcaaccaaatctctatcaatct 47128482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 197 - 342
Target Start/End: Original strand, 9579133 - 9579278
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9579133 aatctctatcaatctctattttagtaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactg 9579232  T
Q  297 attgaaactttgagagttgagaatcagtgatgatttggtgaagaag 342  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  9579233 attgaaaccttgagagttgagaatcagtgatgatttggtgaagaag 9579278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 197 - 342
Target Start/End: Original strand, 9584828 - 9584973
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9584828 aatctctatcaatctctattttagtaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactg 9584927  T
Q  297 attgaaactttgagagttgagaatcagtgatgatttggtgaagaag 342  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  9584928 attgaaaccttgagagttgagaatcagtgatgatttggtgaagaag 9584973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 197 - 342
Target Start/End: Complemental strand, 48208850 - 48208705
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48208850 aatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactg 48208751  T
Q  297 attgaaactttgagagttgagaatcagtgatgatttggtgaagaag 342  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||    
T  48208750 attgaaaccttgagagttgagaatcagcgatgatttggtgaagaag 48208705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 197 - 342
Target Start/End: Complemental strand, 10978507 - 10978362
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||    
T  10978507 aatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttgctttggaaagggggaaactg 10978408  T
Q  297 attgaaactttgagagttgagaatcagtgatgatttggtgaagaag 342  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  10978407 attgaaaccttgagagttgagaatcagtgatgatttggtgaagaag 10978362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 197 - 342
Target Start/End: Original strand, 23510494 - 23510639
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  23510494 aatctctatcaatctctattttagaaatttcaacattcaaattaatgaaagagagtttatttactaaccaaacagtgttgttttggaaaggggaaaactg 23510593  T
Q  297 attgaaactttgagagttgagaatcagtgatgatttggtgaagaag 342  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  23510594 attgaaaccttgagagttgagaatcagtgatgatttggtgaagaag 23510639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 203 - 342
Target Start/End: Original strand, 34769221 - 34769360
Alignment:
Q  203 tatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaa 302  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34769221 tatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggtaaactgattgaa 34769320  T
Q  303 actttgagagttgagaatcagtgatgatttggtgaagaag 342  Q
    || ||||||||||||||||||||||| |||||||||||||    
T  34769321 accttgagagttgagaatcagtgatgttttggtgaagaag 34769360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 197 - 342
Target Start/End: Complemental strand, 47128386 - 47128242
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| ||||||||||||||||  |||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  47128386 aatctctatcaatctctattttcacaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacaatgttgttttggaaaggggaaaactg 47128287  T
Q  297 attgaaactttgagagttgagaatcagtgatgatttggtgaagaag 342  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||    
T  47128286 attgaaac-ttgagagttgagaatcactgatgatttggtgaagaag 47128242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 2975650 - 2975757
Alignment:
Q  17 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 116  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2975650 acaatgttgaggttgaaccataaaataaaattaaagcataattagtaattagcaacatatatgatatataaattcaattatacacttaaatttgaataat 2975749  T
Q  117 tttaacaa 124  Q
    ||||||||    
T  2975750 tttaacaa 2975757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 197 - 304
Target Start/End: Complemental strand, 54779839 - 54779732
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  54779839 aatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttatggaaaggggaaaactg 54779740  T
Q  297 attgaaac 304  Q
    ||||||||    
T  54779739 attgaaac 54779732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 197 - 318
Target Start/End: Original strand, 35780190 - 35780311
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |    
T  35780190 aatctctatcaatctctattttagcaatttcaacattcaaactaatgaaagagagtttatttacttaccaaacagtgttgttttggaaagggaaaaaccg 35780289  T
Q  297 attgaaactttgagagttgaga 318  Q
    |||||||| ||||||| |||||    
T  35780290 attgaaaccttgagaggtgaga 35780311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 203 - 299
Target Start/End: Original strand, 10431127 - 10431223
Alignment:
Q  203 tatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgatt 299  Q
    ||||||||||||||||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||    
T  10431127 tatcaatctctattttaacaatttcatcattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttgaaaagggaaaaactgatt 10431223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 38066697 - 38066752
Alignment:
Q  19 aatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacat 74  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  38066697 aatgttgaggttgaaccataaaataaaattaagacataattagtaattagcaacat 38066752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 10978577 - 10978539
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  10978577 caaacagtgttgttttggaaaggggaaaaccgattgaaa 10978539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 47128456 - 47128418
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  47128456 caaacagtgttgttttggaaaggggaaaaccgattgaaa 47128418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 48208920 - 48208882
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  48208920 caaacagtgttgttttggaaaggggaaaaccgattgaaa 48208882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 54779909 - 54779871
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  54779909 caaacagtgttgttttggaaaggggaaaaccgattgaaa 54779871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 9579063 - 9579101
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  9579063 caaacagtgttgttttggaaatgggaaaaccgattgaaa 9579101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 9584758 - 9584796
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  9584758 caaacagtgttgttttggaaatgggaaaaccgattgaaa 9584796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 35780120 - 35780158
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  35780120 caaacagtgttgttttggaaaggggaaaatcgattgaaa 35780158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 19740594 - 19740812
Alignment:
Q  17 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19740594 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgattaat 19740693  T
Q  117 tttaacaaaaactcccaaaacaataaatatgcagaaatcaattattactaattccgttaataatcaaccaaatctttatcaatctttatcaatctctatt 216  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |    
T  19740694 tttaacaaaaactcccaaaacagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctttatcaatctcta-t 19740792  T
Q  217 ttagcaatttcaacgttcaa 236  Q
    |||||||||||||| |||||    
T  19740793 ttagcaatttcaacattcaa 19740812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 197 - 342
Target Start/End: Original strand, 19740883 - 19741028
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| |||| |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  19740883 aatctctatctatctctattttaacaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaagggaaaaactg 19740982  T
Q  297 attgaaactttgagagttgagaatcagtgatgatttggtgaagaag 342  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  19740983 attgaaaccttgagagttgagaatcagtgatgatttggtgaagaag 19741028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 19740813 - 19740851
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  19740813 caaacagtgttgttttggaaaggggaaaaccgattgaaa 19740851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 34693830 - 34693611
Alignment:
Q  17 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 116  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34693830 acaatgttgagattgaaccataaaataaaattataacataattagtaattagcaacatatatgatatataaattcaattatacactaaaatttgaataat 34693731  T
Q  117 tttaacaaaaactcccaaaacaataaatatgcagaaatcaattattactaattccgttaataatcaaccaaatctttatcaatctttatcaatctctatt 216  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  34693730 tttaacaaaaactcccaaaacagtaaatatgcagaaatcaattattaccaattctgttaataatcaaccaaatctctatcaatctttatcaatctctatt 34693631  T
Q  217 ttagcaatttcaacgttcaa 236  Q
    |||||||||||||| |||||    
T  34693630 ttagcaatttcaacattcaa 34693611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 34716242 - 34716023
Alignment:
Q  17 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 116  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34716242 acaatgttgagattgaaccataaaataaaattataacataattagtaattagcaacatatatgatatataaattcaattatacactaaaatttgaataat 34716143  T
Q  117 tttaacaaaaactcccaaaacaataaatatgcagaaatcaattattactaattccgttaataatcaaccaaatctttatcaatctttatcaatctctatt 216  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  34716142 tttaacaaaaactcccaaaacagtaaatatgcagaaatcaattattaccaattctgttaataatcaaccaaatctctatcaatctttatcaatctctatt 34716043  T
Q  217 ttagcaatttcaacgttcaa 236  Q
    |||||||||||||| |||||    
T  34716042 ttagcaatttcaacattcaa 34716023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 40445572 - 40445408
Alignment:
Q  37 taaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataattttaacaaaaactcccaaaa 136  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40445572 taaaataaaataaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataattttaacaaaaactcccaaaa 40445473  T
Q  137 caataaatatgcagaaatcaattattactaattccgttaataatcaaccaaatctttatcaatct 201  Q
    || ||||||||||||||| ||||||||||||||  |||||||||||||||||||| |||||||||    
T  40445472 cagtaaatatgcagaaattaattattactaattttgttaataatcaaccaaatctctatcaatct 40445408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 197 - 345
Target Start/End: Complemental strand, 34693540 - 34693392
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||| |||||||    
T  34693540 aatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagaaagtttatttacttaccaaacaatgttgttttggaaagggaaaaactg 34693441  T
Q  297 attgaaactttgagagttgagaatcagtgatgatttggtgaagaagaag 345  Q
    ||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  34693440 atttaaaccttgagagttgagaatcagtgatgatttggtgaagaagaag 34693392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 197 - 345
Target Start/End: Complemental strand, 34715952 - 34715804
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||| |||||||    
T  34715952 aatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagaaagtttatttacttaccaaacaatgttgttttggaaagggaaaaactg 34715853  T
Q  297 attgaaactttgagagttgagaatcagtgatgatttggtgaagaagaag 345  Q
    ||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  34715852 atttaaaccttgagagttgagaatcagtgatgatttggtgaagaagaag 34715804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 197 - 318
Target Start/End: Original strand, 29940240 - 29940361
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||    
T  29940240 aatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccagacagtgttgttttggaaaggggaaaattg 29940339  T
Q  297 attgaaactttgagagttgaga 318  Q
    |||||||| |||||||||||||    
T  29940340 attgaaaccttgagagttgaga 29940361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 40445347 - 40445272
Alignment:
Q  235 aaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaactttgagagt 313  Q
    ||||||||||||||||| | |||||||||||||||| |||  |||||||||||||||||| ||||| ||| ||||||||    
T  40445347 aaattaatgaaagagaggttatttacttaccaaacaatgt--ttttggaaaggggaaaac-gattggaaccttgagagt 40445272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 34693610 - 34693572
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  34693610 caaacagtgttgttttggaaaggggaaaaccgattgaaa 34693572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 34716022 - 34715984
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  34716022 caaacagtgttgttttggaaaggggaaaaccgattgaaa 34715984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 29940130 - 29940169
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaa 236  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  29940130 aatctctatcaatctctattttagcaatttcaacattcaa 29940169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 29940170 - 29940208
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  29940170 caaacagagttgttttggaaaggggaaaaccgattgaaa 29940208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 41878851 - 41878640
Alignment:
Q  25 gagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataattttaacaa 124  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41878851 gagattgaaccataaaataaaataaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataattttaacaa 41878752  T
Q  125 aaactcccaaaacaataaatatgcagaaatcaattattactaattccgttaataatcaaccaaatctttatcaatctttatcaatctctattttagcaat 224  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41878751 aaattcccaaaacaataaatatgcagaaatcaattattactatttcggttaataatcaaccaaatctctatcaatctttatcaatctctattttagcaat 41878652  T
Q  225 ttcaacgttcaa 236  Q
    |||||| |||||    
T  41878651 ttcaacattcaa 41878640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 45472835 - 45472560
Alignment:
Q  17 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 116  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  45472835 acaatgttgagattgaaccataacataaaattaaaacataattagtaattaacaacatatattatatataaattcaattaaacacagaaatttgaataat 45472736  T
Q  117 tttaacaaaaactcccaaaacaataaatatgcagaaatca--attattactaattccgttaataatcaaccaaatctttatcaatctttatcaatctcta 214  Q
    |||||||||||||||||||||| |||||||||||||||||   || ||   || ||  | || | |||| ||||||| |||||||          |||||    
T  45472735 tttaacaaaaactcccaaaacagtaaatatgcagaaatcagtgttgttctcaaatc--tcaacattcaa-caaatctctatcaat----------ctcta 45472649  T
Q  215 ttttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    ||||||  |||||||| ||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||  |||||||    
T  45472648 ttttagagatttcaacattcaaattaatgaaagagagtttctttacttaccaaatagtgttgttttggaaaggggaaaaccaattgaaa 45472560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 197 - 344
Target Start/End: Complemental strand, 41878569 - 41878423
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  41878569 aatctctatcaatctctattttaacaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacaatgttgttttggaaaggggaaaactg 41878470  T
Q  297 attgaaactttgagagttgagaatcagtgatgatttggtgaagaagaa 344  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  41878469 attgaaac-ttgagagttgagaatcagtgatgatttggtgaagaagaa 41878423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 41878639 - 41878601
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  41878639 caaacagtgttgttttggaaaggggaaaaccgattgaaa 41878601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 3954250 - 3954461
Alignment:
Q  25 gagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataattttaacaa 124  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3954250 gagattgaaccataaaataaaataaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataattttaacaa 3954349  T
Q  125 aaactcccaaaacaataaatatgcagaaatcaattattactaattccgttaataatcaaccaaatctttatcaatctttatcaatctctattttagcaat 224  Q
    |||||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3954350 aaactcccaaaacagtaaatattcagaaatcaattattactacttctgttaataatcaaccaaatctctatcaatctttatcaatctctattttagcaat 3954449  T
Q  225 ttcaacgttcaa 236  Q
    |||||| |||||    
T  3954450 ttcaacattcaa 3954461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 197 - 342
Target Start/End: Original strand, 3954532 - 3954676
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  3954532 aatctctatcaatctctattttaacaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaatgggaaaactg 3954631  T
Q  297 attgaaactttgagagttgagaatcagtgatgatttggtgaagaag 342  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||    
T  3954632 attgaaac-ttgagagttgagaatcactgatgatttggtgaagaag 3954676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 8073728 - 8073802
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacag 271  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  8073728 aatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacag 8073802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 54577872 - 54577929
Alignment:
Q  17 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacat 74  Q
    ||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||    
T  54577872 acaatgttgaggttgaaccataaaataaaattaagatataattagtaattagcaacat 54577929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 3954462 - 3954500
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  3954462 caaacagtgttgttttggaaaggggaaaaccgattgaaa 3954500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 8073618 - 8073657
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaa 236  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  8073618 aatctctatcaatctctattttagcaatttcaacattcaa 8073657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 8073658 - 8073696
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  8073658 caaacagtgttgttttagaaaggggaaaaccgattgaaa 8073696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Original strand, 8073802 - 8073832
Alignment:
Q  288 ggaaaactgattgaaactttgagagttgaga 318  Q
    |||||||||||||||||||||||||||||||    
T  8073802 ggaaaactgattgaaactttgagagttgaga 8073832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 21741279 - 21741498
Alignment:
Q  17 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21741279 acaatgttgagattgaaccataaaataaaattaaaacataattagtcattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 21741378  T
Q  117 tttaacaaaaactcccaaaacaataaatatgcagaaatcaattattactaattccgttaataatcaaccaaatctttatcaatctttatcaatctctatt 216  Q
    |||||||||||||  ||| ||| ||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  21741379 tttaacaaaaactttcaatacagtaaatatgcagaaatcaattattactaattatgttaataatcaaccaaatctctatcaatctttatcaatctctatt 21741478  T
Q  217 ttagcaatttcaacgttcaa 236  Q
    |||||||||||||| |||||    
T  21741479 ttagcaatttcaacattcaa 21741498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 4977238 - 4977415
Alignment:
Q  24 tgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataattttaaca 123  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4977238 tgagattaaaccataaaataaaattaaaacataattagtaattagcaacatatattatatataaattcaattatacactgaaatttgaataattttaaca 4977337  T
Q  124 aaaactcccaaaacaataaatatgcagaaatcaattattactaattccgttaataatcaaccaaatctttatcaatct 201  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  4977338 aaaactcccaaaacagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatct 4977415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 50881309 - 50881129
Alignment:
Q  56 aattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataattttaacaaaaactcccaaaacaataaatatgcagaaatc 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||     
T  50881309 aattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataattttaacaaaaactctcaaaatagtaaatatgtagaaatt 50881210  T
Q  156 aattattactaattccgttaataatcaaccaaatctttatcaatctttatcaatctctattttagcaatttcaacgttcaa 236  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  50881209 aattattactaattatgttaataatcaaccaaatttttatcaatctttatcaatctctattttagcaatttcaacattcaa 50881129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 5316437 - 5316255
Alignment:
Q  17 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 116  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||| |||||||||||||||| ||  |||||| ||||||    
T  5316437 acaatgttgagattcaaccataaaataaaattaaaccataattagtaattagcaa--tatatgatgtataaattcaattatataccaaaatttaaataat 5316340  T
Q  117 tttaacaaaaactcccaaaacaataaatatgcagaaatcaattattactaattccgttaataatcaaccaaatctttatcaatct 201  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  5316339 tttaacaaaaactcccaaaactgtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatct 5316255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 203 - 342
Target Start/End: Complemental strand, 5316153 - 5316014
Alignment:
Q  203 tatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaa 302  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5316153 tatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaa 5316054  T
Q  303 actttgagagttgagaatcagtgatgatttggtgaagaag 342  Q
    || |||||||||||||||||||||||||||||||||||||    
T  5316053 accttgagagttgagaatcagtgatgatttggtgaagaag 5316014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 201 - 342
Target Start/End: Original strand, 21741573 - 21741714
Alignment:
Q  201 tttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattg 300  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21741573 tttatcaatctttattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactgattg 21741672  T
Q  301 aaactttgagagttgagaatcagtgatgatttggtgaagaag 342  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  21741673 aaaccttgagagttgagaatcagtgatgatttggtgaagaag 21741714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 23182450 - 23182309
Alignment:
Q  17 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  23182450 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatattatatataaattcaattatacacagaaatttgaataat 23182351  T
Q  117 tttaacaaaaactcccaaaac--aataaatatgcagaaatca 156  Q
    |||||||||||||||||||||   ||||||||||||||||||    
T  23182350 tttaacaaaaactcccaaaacggtataaatatgcagaaatca 23182309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 203 - 342
Target Start/End: Complemental strand, 50880942 - 50880804
Alignment:
Q  203 tatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactgattgaa 302  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| |||||| ||||||    
T  50880942 tatcaatctctattttagcaatttcaacattcaaattaatgaaagacagtttatttacttaccaaacagt-ttgttttggaaagggaaaaacttattgaa 50880844  T
Q  303 actttgagagttgagaatcagtgatgatttggtgaagaag 342  Q
    || |||||||||||||||||||| | ||||||||||||||    
T  50880843 accttgagagttgagaatcagtggttatttggtgaagaag 50880804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 197 - 345
Target Start/End: Original strand, 4977579 - 4977734
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||      
T  4977579 aatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttctttacttaccaaacaatgttgttttggaaaggggaaaacca 4977678  T
Q  297 attgaaactttgagagttgag-------aatcagtgatgatttggtgaagaagaag 345  Q
    |||||||| ||||||||||||       ||||||||||||||||||||| ||||||    
T  4977679 attgaaaccttgagagttgagagtctacaatcagtgatgatttggtgaacaagaag 4977734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 197 - 303
Target Start/End: Complemental strand, 23182286 - 23182180
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| ||||||||||||||||||  |||||||| ||||||||||| ||||||||||  ||||||||||||| |||||||| ||||||||||||||||      
T  23182286 aatctctatcaatctctattttagggatttcaacattcaaattaattaaagagagtttctttacttaccaaatagtgttgtgttggaaaggggaaaacca 23182187  T
Q  297 attgaaa 303  Q
    |||||||    
T  23182186 attgaaa 23182180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 4977441 - 4977479
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  4977441 caaacagtgttgttttggacaggggaaaaccgattgaaa 4977479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 21741499 - 21741537
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  21741499 caaacagtgttgttttgaaaaggggaaaaccgattgaaa 21741537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 4977407 - 4977440
Alignment:
Q  203 tatcaatctctattttagcaatttcaacgttcaa 236  Q
    |||||||||||||||||||||||||||| |||||    
T  4977407 tatcaatctctattttagcaatttcaacattcaa 4977440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 50881052 - 50881019
Alignment:
Q  203 tatcaatctctattttagcaatttcaacgttcaa 236  Q
    |||||||||||||||||||||||||||| |||||    
T  50881052 tatcaatctctattttagcaatttcaacattcaa 50881019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 41 - 236
Target Start/End: Complemental strand, 30853935 - 30853740
Alignment:
Q  41 ataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataattttaacaaaaactcccaaaacaat 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30853935 ataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataattttaacaaaaactcccaaaacagt 30853836  T
Q  141 aaatatgcagaaatcaattattactaattccgttaataatcaaccaaatctttatcaatctttatcaatctctattttagcaatttcaacgttcaa 236  Q
    ||||||||| ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  30853835 aaatatgcataaatcaattattattaattctgttaataatcaaccaaatctctatcaatctttatcaatctctattttagcaatttcaacattcaa 30853740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 27078873 - 27078689
Alignment:
Q  17 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27078873 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacatatatgatatataaattcaattatacactgaaatttgaataat 27078774  T
Q  117 tttaacaaaaactcccaaaacaataaatatgcagaaatcaattattactaattccgttaataatcaaccaaatctttatcaatct 201  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  27078773 tttaaaaaaaactcccaaaacagtaaatatgcagaaatcaattattactaattcagttaataatcaaccaaatctctatcaatct 27078689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 197 - 340
Target Start/End: Original strand, 16592495 - 16592638
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  16592495 aatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttgaaaaggggaaaactg 16592594  T
Q  297 attgaaactttgagagttgagaatcagtgatgatttggtgaaga 340  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  16592595 attgaaactttgagagttgagaataattgatgatttggtgaaga 16592638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 197 - 342
Target Start/End: Complemental strand, 27078593 - 27078448
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  27078593 aatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttatcaaactgtgttgttttggaaaggggaaaactg 27078494  T
Q  297 attgaaactttgagagttgagaatcagtgatgatttggtgaagaag 342  Q
    |||||||  |||||||||||||||||||||||||||||||||||||    
T  27078493 attgaaatcttgagagttgagaatcagtgatgatttggtgaagaag 27078448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 70 - 201
Target Start/End: Original strand, 23285335 - 23285466
Alignment:
Q  70 aacatatatgatatataaattcaattatacactgaaatttgaataattttaacaaaaactcccaaaacaataaatatgcagaaatcaattattactaatt 169  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23285335 aacatatatgatatataaattcaattatacactaaaatttgaataattttaacaaaaactcccaaaacagtaaatatgcagaaatcaattattactaatt 23285434  T
Q  170 ccgttaataatcaaccaaatctttatcaatct 201  Q
    | |||||||||||||||||||| |||||||||    
T  23285435 ctgttaataatcaaccaaatctctatcaatct 23285466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 197 - 336
Target Start/End: Original strand, 22987125 - 22987264
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  22987125 aatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtattgttttggaaaggggaaaactg 22987224  T
Q  297 attgaaactttgagagttgagaatcagtgatgatttggtg 336  Q
    |||||||| ||||||||||||||| | |||||||||||||    
T  22987225 attgaaaccttgagagttgagaatgaatgatgatttggtg 22987264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 197 - 342
Target Start/End: Complemental strand, 30853669 - 30853525
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||||||||||||| | |||||||||||||||||||||||    
T  30853669 aatctctatcaatctctattt-agcaatttcaacattcaaattaattaaagagagtttatttacttaccaaacactattgttttggaaaggggaaaactg 30853571  T
Q  297 attgaaactttgagagttgagaatcagtgatgatttggtgaagaag 342  Q
    |||||||  ||||||||||||||||| |||||||||||||||||||    
T  30853570 attgaaatcttgagagttgagaatcaatgatgatttggtgaagaag 30853525  T

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Target: chr5; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 197 - 304
Target Start/End: Original strand, 23285566 - 23285673
Alignment:
Q  197 aatctttatcaatctctattttagcaatttcaacgttcaaattaatgaaagagagttgatttacttaccaaacagtgttgttttggaaaggggaaaactg 296  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23285566 aatctctatcaatctctattttagcaatttcaacattcaaattaatgaaagagagtttatttacttaccaaacagtgttgttttggaaaggggaaaactg 23285665  T
Q  297 attgaaac 304  Q
    ||||||||    
T  23285666 attgaaac 23285673  T

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Target: chr5; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 22986932 - 22987054
Alignment:
Q  113 taattttaacaaaaactcccaaaacaataaatatgcagaaatcaattattactaattccgttaataatcaaccaaatctttatcaatctttatcaatctc 212  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||  |||||||||||| ||||||| ||||||||||||||||||||    
T  22986932 taattttaacaaaaactcccaaaacagtaaatatgcagaaatcaattattaataattgtgttaataatcaatcaaatctctatcaatctttatcaatctc 22987031  T
Q  213 tattttagcaatttcaacgttcaa 236  Q
    || |||| |||||||||| |||||    
T  22987032 ta-tttatcaatttcaacattcaa 22987054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 23284983 - 23285034
Alignment:
Q  17 acaatgttgagattgaaccataaaataaaattaaaacataattagtaattag 68  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23284983 acaatgttgagattaaaccataaaataaaattaaaacataattagtaattag 23285034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 22987055 - 22987093
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  22987055 caaacagtgttgttttggaaaggggaaaaccgattgaaa 22987093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 30853739 - 30853701
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  30853739 caaacagtgttgttttggaaaggggaaaaccgattgaaa 30853701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 23285496 - 23285534
Alignment:
Q  265 caaacagtgttgttttggaaaggggaaaactgattgaaa 303  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  23285496 caaacagtgttgttttggaaaggggaaaatcgattgaaa 23285534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 23285458 - 23285491
Alignment:
Q  203 tatcaatctctattttagcaatttcaacgttcaa 236  Q
    |||||||||||||||||||||||||||| |||||    
T  23285458 tatcaatctctattttagcaatttcaacattcaa 23285491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 182410 - 182355
Alignment:
Q  19 aatgttgagattgaaccataaaataaaattaaaacataattagtaattagcaacat 74  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  182410 aatgttgaggttgaaccataaaataaaattaagacataattagtaattagcaacat 182355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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