View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_76 (Length: 365)
Name: NF1773_high_76
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_76 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 37833281 - 37832930
Alignment:
| Q |
1 |
cccttagagattatagattacaagtagatagattaagttcctatgttattgtacacatcaatttctgaaatgctgcaagttttttacaccactattcact |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37833281 |
cccttagagattatagattacaaatagatagattaagttcctatgttattgtacacatcaatttctgaaatgctgcaagttttttacaccactattcact |
37833182 |
T |
|
| Q |
101 |
aagttgcacagtgtcctcattttgattggtgtttatatagtagtatgatttggtctgtgagtccagggatttctgcaggtgtctatattgaccccaacgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37833181 |
aagttgcacagtgtcctcattttgattggtgtttatatagtagtatgatttggtctgtgggtccagggatttctgcaggtgtctatattgaccccaacgc |
37833082 |
T |
|
| Q |
201 |
gataggaaaaaccagttgaaaggtttggtaagtattggaccagtgatagagggaatgaaggtcaaattacgccaagcataagttattgttggaataatta |
300 |
Q |
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| T |
37833081 |
gataggaaaaaccagttgaaaggtttggtaagtattggaccattgatagagggaatgaaggtcaaatgacgccaagcataagttatttttggaagaatta |
37832982 |
T |
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| Q |
301 |
tagcagctaccctgaccaattttacagactcaatcttaccgtttcccatcag |
352 |
Q |
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| T |
37832981 |
gagcagctaccctgaccaattttacagactcaatcttaccgtttcccatcag |
37832930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 81 - 294
Target Start/End: Complemental strand, 37838724 - 37838511
Alignment:
| Q |
81 |
tttttacaccactattcactaagttgcacagtgtcctcattttgattggtgtttatatagtagtatgatttggtctgtgagtccagggatttctgcaggt |
180 |
Q |
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| T |
37838724 |
tttttccaccactattcactacgttcaacagtggcctctgtttgattggtgttgataaagtagtgtgacttgcgctgtgaatacaaggatttctgcaggt |
37838625 |
T |
|
| Q |
181 |
gtctatattgaccccaacgcgataggaaaaaccagttgaaaggtttggtaagtattggaccagtgatagagggaatgaaggtcaaattacgccaagcata |
280 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||| | |||||||||| |
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| T |
37838624 |
gtctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattggaccggtgatagagggacggaagatcaaaattggccaagcata |
37838525 |
T |
|
| Q |
281 |
agttattgttggaa |
294 |
Q |
| |
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|||||| |||||| |
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| T |
37838524 |
ggttatttttggaa |
37838511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 133 - 287
Target Start/End: Complemental strand, 35025639 - 35025485
Alignment:
| Q |
133 |
ttatatagtagtatgatttggtctgtgagtccagggatttctgcaggtgtctatattgaccccaacgcgataggaaaaaccagttgaaaggtttggtaag |
232 |
Q |
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||||| |||||| ||||||| ||||||||| || |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
35025639 |
ttatagagtagtgtgatttgatctgtgagtacaaggatttctgcaggtacctatattgaccccaacgtgttaggaaaaaccagttgaaaggtttggtaag |
35025540 |
T |
|
| Q |
233 |
tattggaccagtgatagagggaatgaaggtcaaattacgccaagcataagttatt |
287 |
Q |
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| T |
35025539 |
tattggaccagtgatagagggaaggaagatcaaactaggccaagcataggttatt |
35025485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 142 - 294
Target Start/End: Complemental strand, 37851992 - 37851840
Alignment:
| Q |
142 |
agtatgatttggtctgtgagtccagggatttctgcaggtgtctatattgaccccaacgcgataggaaaaaccagttgaaaggtttggtaagtattggacc |
241 |
Q |
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||||||||||||||||| ||| || ||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37851992 |
agtatgatttggtctgtaagtacaaggacttctgcaggtgcctatattgaccccaatgtgataggaaaaaccagttgaaaggtttggtaagtattggacc |
37851893 |
T |
|
| Q |
242 |
agtgatagagggaatgaaggtcaaattacgccaagcataagttattgttggaa |
294 |
Q |
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||||||||||||| |||| ||||| || ||||||||| |||||| |||||| |
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| T |
37851892 |
agtgatagagggacggaagatcaaactagaccaagcataggttatttttggaa |
37851840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 37846308 - 37846237
Alignment:
| Q |
184 |
tatattgaccccaacgcgataggaaaaaccagttgaaaggtttggtaagtattggaccagtgatagagggaa |
255 |
Q |
| |
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||||||||||||| | || ||||||||||| |||||| ||| |||||| |||| |||||||||||||||| |
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| T |
37846308 |
tatattgaccccactgtgagaggaaaaaccaattgaaaagttgtgtaagtgttggcccagtgatagagggaa |
37846237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 37844746 - 37844688
Alignment:
| Q |
184 |
tatattgaccccaacgcgataggaaaaaccagttgaaaggtttggtaagtattggacca |
242 |
Q |
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||||||| |||||||| || || |||||||| |||||||||||||||| || ||||||| |
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| T |
37844746 |
tatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggacca |
37844688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 98 - 294
Target Start/End: Complemental strand, 36867388 - 36867192
Alignment:
| Q |
98 |
actaagttgcacagtgtcctcattttgattggtgtttatatagtagtatgatttggtctgtgagtccagggatttctgcaggtgtctatattgaccccaa |
197 |
Q |
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||||||||| |||||| ||||| |||||| || ||||| ||||| ||||||| ||| ||||| || |||||||||||||| ||||||||||||||| |
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| T |
36867388 |
actaagttggacagtgacctcagtttgatccgtacttatagagtagggtgatttgatctttgagtacaaggatttctgcaggtacctatattgaccccaa |
36867289 |
T |
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| Q |
198 |
cgcgataggaaaaaccagttgaaaggtttggtaagtattggaccagtgatagagggaatgaaggtcaaattacgccaagcataagttattgttggaa |
294 |
Q |
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|| ||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||| ||||| || ||||| |||| ||||| |||||| |
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| T |
36867288 |
cgtgataggaaaaaccagttgaaaggtttgataagtattaaactagtgatagagggaaggaagatcaaactaggccaaacatagtttatttttggaa |
36867192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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