View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_high_79 (Length: 357)

Name: NF1773_high_79
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_high_79
NF1773_high_79
[»] chr4 (32 HSPs)
chr4 (18-337)||(17292665-17292983)
chr4 (18-198)||(4910526-4910705)
chr4 (18-198)||(9718395-9718573)
chr4 (88-221)||(25145647-25145780)
chr4 (82-198)||(21410932-21411048)
chr4 (82-198)||(21412398-21412514)
chr4 (83-197)||(24076264-24076378)
chr4 (82-198)||(21170617-21170733)
chr4 (82-198)||(36775438-36775554)
chr4 (82-198)||(49790885-49791001)
chr4 (88-180)||(956413-956505)
chr4 (88-180)||(37867606-37867698)
chr4 (82-198)||(51026744-51026860)
chr4 (82-198)||(45940679-45940795)
chr4 (108-198)||(2774158-2774247)
chr4 (308-346)||(24576342-24576380)
chr4 (88-180)||(1043879-1043971)
chr4 (88-180)||(4784302-4784394)
chr4 (88-180)||(34152245-34152337)
chr4 (88-172)||(42887443-42887527)
chr4 (88-180)||(56140049-56140141)
chr4 (85-180)||(44559283-44559378)
chr4 (88-189)||(41793883-41793984)
chr4 (117-190)||(49816404-49816477)
chr4 (88-160)||(34528779-34528851)
chr4 (117-189)||(43888481-43888553)
chr4 (88-138)||(6176396-6176446)
chr4 (88-138)||(21016258-21016308)
chr4 (88-138)||(49095821-49095871)
chr4 (88-178)||(49422717-49422807)
chr4 (91-160)||(49572276-49572345)
chr4 (88-160)||(39589935-39590007)
[»] chr5 (26 HSPs)
chr5 (130-337)||(13130382-13130590)
chr5 (18-198)||(7400849-7401027)
chr5 (86-226)||(10978400-10978540)
chr5 (83-198)||(1972515-1972630)
chr5 (83-198)||(7484449-7484564)
chr5 (82-198)||(6792402-6792518)
chr5 (18-67)||(13130291-13130340)
chr5 (109-225)||(8531265-8531381)
chr5 (88-180)||(18309415-18309507)
chr5 (82-180)||(20199495-20199593)
chr5 (88-178)||(35927042-35927132)
chr5 (88-189)||(3602488-3602588)
chr5 (89-198)||(4723053-4723161)
chr5 (82-190)||(1695954-1696062)
chr5 (82-190)||(36349259-36349366)
chr5 (112-198)||(31239143-31239229)
chr5 (88-141)||(30710674-30710727)
chr5 (88-180)||(25499236-25499328)
chr5 (88-180)||(34682889-34682981)
chr5 (88-180)||(35566426-35566518)
chr5 (88-138)||(6312-6362)
chr5 (88-138)||(11347878-11347928)
chr5 (88-138)||(19035757-19035807)
chr5 (85-138)||(11028525-11028578)
chr5 (88-141)||(38855229-38855282)
chr5 (157-225)||(31488927-31488995)
[»] chr6 (21 HSPs)
chr6 (115-340)||(17464485-17464711)
chr6 (84-226)||(21863873-21864015)
chr6 (84-225)||(14485933-14486073)
chr6 (92-198)||(30763946-30764052)
chr6 (82-198)||(12397934-12398049)
chr6 (104-223)||(11181798-11181917)
chr6 (83-190)||(32133624-32133731)
chr6 (83-190)||(33201427-33201534)
chr6 (89-180)||(34802145-34802236)
chr6 (88-180)||(13403966-13404058)
chr6 (82-198)||(20241306-20241422)
chr6 (82-198)||(22135290-22135406)
chr6 (82-198)||(22142643-22142759)
chr6 (18-69)||(30763870-30763921)
chr6 (90-180)||(13616862-13616952)
chr6 (88-180)||(32026584-32026676)
chr6 (88-180)||(32036643-32036735)
chr6 (88-138)||(6206564-6206614)
chr6 (88-138)||(11693531-11693581)
chr6 (88-138)||(27641254-27641304)
chr6 (21-69)||(21863807-21863855)
[»] chr7 (26 HSPs)
chr7 (18-337)||(3379953-3380271)
chr7 (18-198)||(4230611-4230789)
chr7 (18-189)||(1641574-1641744)
chr7 (89-190)||(22291992-22292093)
chr7 (82-198)||(17184338-17184453)
chr7 (82-198)||(42736129-42736244)
chr7 (82-198)||(43350347-43350463)
chr7 (84-225)||(16885955-16886095)
chr7 (83-190)||(15900362-15900469)
chr7 (119-190)||(20877016-20877087)
chr7 (85-180)||(28113364-28113459)
chr7 (88-180)||(21186255-21186347)
chr7 (88-160)||(28978194-28978266)
chr7 (88-180)||(36392782-36392874)
chr7 (88-180)||(45362254-45362346)
chr7 (88-180)||(48271807-48271899)
chr7 (94-180)||(42683559-42683645)
chr7 (157-221)||(27316986-27317050)
chr7 (157-225)||(41934488-41934555)
chr7 (88-138)||(9366198-9366248)
chr7 (88-138)||(20565837-20565887)
chr7 (88-198)||(42504336-42504446)
chr7 (88-178)||(48194123-48194213)
chr7 (88-180)||(34142007-34142099)
chr7 (88-180)||(41623237-41623329)
chr7 (88-180)||(46861156-46861248)
[»] scaffold0500 (1 HSPs)
scaffold0500 (88-225)||(1574-1711)
[»] chr1 (31 HSPs)
chr1 (18-217)||(16531083-16531281)
chr1 (83-198)||(23343655-23343770)
chr1 (82-198)||(35585858-35585974)
chr1 (82-198)||(38044160-38044276)
chr1 (82-198)||(15355740-15355856)
chr1 (82-198)||(37779284-37779400)
chr1 (82-198)||(35186139-35186255)
chr1 (82-198)||(39856199-39856315)
chr1 (88-180)||(41803382-41803474)
chr1 (82-198)||(49260635-49260751)
chr1 (107-198)||(17685310-17685401)
chr1 (85-176)||(35525152-35525243)
chr1 (82-190)||(12790229-12790334)
chr1 (117-190)||(40532368-40532441)
chr1 (88-172)||(14172718-14172802)
chr1 (82-198)||(24269324-24269439)
chr1 (88-180)||(36911036-36911128)
chr1 (88-180)||(46142413-46142505)
chr1 (85-180)||(13974082-13974177)
chr1 (111-198)||(14771756-14771843)
chr1 (92-190)||(18974457-18974555)
chr1 (88-190)||(42570749-42570851)
chr1 (88-180)||(26494614-26494706)
chr1 (88-160)||(26634166-26634238)
chr1 (88-180)||(29437090-29437181)
chr1 (88-180)||(51270959-51271051)
chr1 (88-138)||(49428537-49428587)
chr1 (83-140)||(19261466-19261523)
chr1 (88-180)||(24363025-24363117)
chr1 (88-180)||(29761139-29761230)
chr1 (88-160)||(48227687-48227759)
[»] chr3 (35 HSPs)
chr3 (83-198)||(50341398-50341513)
chr3 (269-351)||(18441478-18441562)
chr3 (269-351)||(19486552-19486636)
chr3 (18-198)||(27096582-27096761)
chr3 (18-221)||(20374869-20375070)
chr3 (82-198)||(49274565-49274681)
chr3 (82-198)||(11377936-11378052)
chr3 (83-198)||(44928606-44928721)
chr3 (82-198)||(10052312-10052427)
chr3 (82-198)||(14632613-14632729)
chr3 (82-198)||(34471016-34471132)
chr3 (82-198)||(50458205-50458321)
chr3 (88-198)||(51012247-51012357)
chr3 (88-176)||(13894866-13894954)
chr3 (88-176)||(7247212-7247300)
chr3 (85-178)||(41579076-41579169)
chr3 (88-180)||(34646182-34646274)
chr3 (88-180)||(45099430-45099522)
chr3 (88-180)||(46345566-46345658)
chr3 (88-141)||(34050814-34050867)
chr3 (89-178)||(55268041-55268130)
chr3 (88-160)||(34692263-34692335)
chr3 (88-180)||(51694515-51694607)
chr3 (92-180)||(55205906-55205994)
chr3 (89-180)||(49611303-49611394)
chr3 (88-178)||(2429635-2429725)
chr3 (134-224)||(17371772-17371862)
chr3 (18-68)||(18441649-18441699)
chr3 (18-68)||(19486723-19486773)
chr3 (88-138)||(36136104-36136154)
chr3 (88-138)||(49139133-49139183)
chr3 (88-198)||(52568400-52568510)
chr3 (88-138)||(54391532-54391582)
chr3 (88-180)||(49217708-49217800)
chr3 (82-198)||(51016434-51016550)
[»] chr2 (25 HSPs)
chr2 (88-198)||(6977970-6978080)
chr2 (88-225)||(28272590-28272726)
chr2 (18-198)||(15890865-15891042)
chr2 (86-198)||(17537868-17537980)
chr2 (82-190)||(37311596-37311704)
chr2 (88-190)||(16582951-16583053)
chr2 (92-225)||(20989369-20989502)
chr2 (89-190)||(33404897-33404998)
chr2 (88-180)||(41498079-41498171)
chr2 (82-180)||(40676373-40676471)
chr2 (18-190)||(16413166-16413336)
chr2 (97-198)||(24107739-24107840)
chr2 (82-198)||(5421276-5421392)
chr2 (82-198)||(34520671-34520787)
chr2 (88-180)||(35492683-35492775)
chr2 (18-69)||(28745137-28745188)
chr2 (176-225)||(18333557-18333606)
chr2 (88-180)||(2918325-2918417)
chr2 (96-180)||(19470590-19470674)
chr2 (88-180)||(43492611-43492703)
chr2 (18-69)||(20989527-20989578)
chr2 (88-138)||(3936382-3936432)
chr2 (18-68)||(14913077-14913127)
chr2 (88-138)||(17425869-17425919)
chr2 (88-138)||(43983805-43983855)
[»] chr8 (14 HSPs)
chr8 (83-198)||(26487594-26487709)
chr8 (83-198)||(38032861-38032976)
chr8 (90-198)||(42167900-42168008)
chr8 (18-167)||(10205592-10205740)
chr8 (88-180)||(41855959-41856051)
chr8 (85-177)||(18439257-18439349)
chr8 (88-180)||(28167949-28168041)
chr8 (107-190)||(19241638-19241721)
chr8 (107-190)||(19314822-19314905)
chr8 (88-189)||(484335-484436)
chr8 (88-180)||(41276221-41276313)
chr8 (83-198)||(31171045-31171159)
chr8 (88-138)||(42604639-42604689)
chr8 (88-128)||(38872354-38872394)
[»] scaffold0859 (1 HSPs)
scaffold0859 (82-198)||(1474-1590)
[»] scaffold0618 (1 HSPs)
scaffold0618 (88-180)||(4520-4612)
[»] scaffold0589 (1 HSPs)
scaffold0589 (98-198)||(5438-5538)
[»] scaffold0258 (1 HSPs)
scaffold0258 (119-225)||(9601-9707)
[»] scaffold0494 (1 HSPs)
scaffold0494 (88-189)||(5803-5904)
[»] scaffold0176 (1 HSPs)
scaffold0176 (88-180)||(2932-3024)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 17292983 - 17292665
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttccatnnnnnnnnnnggatttgaaggtgccggtgtacaaccattccaggct 117  Q
    |||||||| |||||| |||||||||||||||| ||||||||||||||||||| |          ||||| |||||||||||||||||||||||| |||||    
T  17292983 gaagaaagaaaaatctcctgtgacatggcacataatcgaatgtgatggttccgtaaaaaaaa--ggattcgaaggtgccggtgtacaaccattcaaggct 17292886  T
Q  118 gaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattgagataagcgacgagggagat 217  Q
    ||||||||||  ||||||||| || ||| ||||| ||||||||||||||| ||||  |||||||||||||||| ||||||||||||||||||||||||||    
T  17292885 gaggaggagcaggaggacatgctattttggtcctcaacaaaaagcaggtgccccaaagactgtcgaggacaacccaattgagataagcgacgagggagat 17292786  T
Q  218 gattaaataatgtaattgattgtaataatcttgaatatg-cgcgcattttgaaacattttgttattgaataatcttgaataaacttgcattttgaataaa 316  Q
    |||||||||||||||| | ||||||||||||||||| || ||| ||||||| ||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  17292785 gattaaataatgtaatggcttgtaataatcttgaatgtgccgcacattttggaacgtttagttattgaataatcttgaataaacttgcgttttgaataaa 17292686  T
Q  317 tttgaagcgaaattgcgtatt 337  Q
    |||||||||||||||| ||||    
T  17292685 tttgaagcgaaattgcatatt 17292665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 4910526 - 4910705
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttccatnnnnnnnnnnggatttgaaggtgccggtgtacaaccattccaggct 117  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |          ||||||||||||| || |||| || ||||| |||||    
T  4910526 gaagaaagcaaaatcgcctatgacatggcacaaaatcgaatgtgatggttccgtaaaaaggaa-ggatttgaaggtgtcgatgtataatcattctaggct 4910624  T
Q  118 gaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattga 198  Q
    ||||| ||||| ||||||||| || ||| ||||| | | ||||||||||| || ||||||||||||||||||| |||||||    
T  4910625 gaggaagagcgggaggacatgctattttggtcctcatccaaaagcaggtgccctagggactgtcgaggacaacccaattga 4910705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 9718573 - 9718395
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttccatnnnnnnnnnnggatttgaaggtgccggtgtacaaccattccaggct 117  Q
    |||||||||||||||  ||||||||||||||| ||||||||||||||||||| |          | ||| ||||||||||||||||||||| ||||||||    
T  9718573 gaagaaagcaaaatcgtctgtgacatggcacataatcgaatgtgatggttccgttaaaaaaagtg-attcgaaggtgccggtgtacaaccagtccaggct 9718475  T
Q  118 gaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattga 198  Q
    ||||||||| | ||||||||| || ||| ||||| | |  ||||||||||  ||||||||||||||||||||| |||||||    
T  9718474 gaggaggagtgggaggacatgctattttggtcctcagc-caaagcaggtgctccagggactgtcgaggacaacccaattga 9718395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 221
Target Start/End: Complemental strand, 25145780 - 25145647
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggac 187  Q
    |||||||||||||||||||||  ||||||||||||||||||  ||||||||||| ||  ||||| ||| |||||||||||  ||||||||||||||||||    
T  25145780 gaaggtgccggtgtacaaccagcccaggctgaggaggagcggaaggacatgttatttcggtcctcaaccaaaagcaggtgcgccagggactgtcgaggac 25145681  T
Q  188 aacacaattgagataagcgacgagggagatgatt 221  Q
    ||| |||||||  || | ||||||| ||||||||    
T  25145680 aacccaattgacttatgtgacgaggaagatgatt 25145647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 21410932 - 21411048
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    |||||||||||||||||||||||| || || ||| ||||||| |||| ||||||||| || ||| ||||| ||| ||||||||||| | ||||||||| |    
T  21410932 ggatttgaaggtgccggtgtacaatcagtcaaggttgaggagaagcgggaggacatgctattttggtcctcaaccaaaagcaggtgccacagggactggc 21411031  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  21411032 gaggacaacccaattga 21411048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 21412514 - 21412398
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    |||||||||||||||||||||||| || || ||| ||||||| |||| ||||||||| || ||| ||||| ||| ||||||||||| | | ||||||| |    
T  21412514 ggatttgaaggtgccggtgtacaatcagtcaaggttgaggagaagcgggaggacatgctattttggtcctcaaccaaaagcaggtgcctctgggactggc 21412415  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  21412414 gaggacaacccaattga 21412398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 24076378 - 24076264
Alignment:
Q  83 gatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcg 182  Q
    |||| ||| ||||||||||||||||||| |||| ||||||||||||  ||||| ||||| ||  ||||| ||| ||||||||||| |||||| ||| |||    
T  24076378 gattcgaaagtgccggtgtacaaccattacaggttgaggaggagcggaaggacttgttatttcggtcctcaaccaaaagcaggtgccccaggcactctcg 24076279  T
Q  183 aggacaacacaattg 197  Q
    |||||||| ||||||    
T  24076278 aggacaacccaattg 24076264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 21170733 - 21170617
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| |||||| || ||||| ||| ||||||||||||  |||||||| || ||| ||||| | | ||||||||||| ||| |||||||||    
T  21170733 ggattcgaaggtgctggtgtataatcattcgaggttgaggaggagcggaaggacatgctattttggtcctcagccaaaagcaggtgcccccgggactgtc 21170634  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  21170633 gaggacaacccaattga 21170617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 36775438 - 36775554
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| |||||| ||  |||| ||| |||||||||||| ||||||||| || ||| ||||| | | ||||||||||| ||||||||| |||    
T  36775438 ggattcgaaggtgctggtgtataattattcgaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccccagggaccgtc 36775537  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  36775538 gaggacaacccaattga 36775554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 49790885 - 49791001
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| | |||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | ||||||||||| |||||||||||||    
T  49790885 ggattcgaaggtgctgatgtataatcattcgaggttgaggaggagcgggaggacatgatattttggtcctcagccaaaagcaggtgccccagggactgtc 49790984  T
Q  182 gaggacaacacaattga 198  Q
    ||| ||||| |||||||    
T  49790985 gagaacaacccaattga 49791001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 956413 - 956505
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || |||||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| ||||||||||||    
T  956413 gaaggtgccggtgtacaatcagtccaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgt 956505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 37867698 - 37867606
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||||||||||||| || || || ||| |||||||||||| |||||||||||| ||| ||||| ||||||||  ||||| ||||||||||||    
T  37867698 gaaggtgccggtgtataatcactcgaggttgaggaggagcgggaggacatgttattttggtcctcaacaaaaacaaggtgccccagggactgt 37867606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 51026744 - 51026860
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| | |||| || ||||| ||| |||||||||||| || |||||| || ||| ||||| | | ||||||||||| |||||||||||||    
T  51026744 ggattcgaaggtgctgatgtataatcattcgaggttgaggaggagcgggatgacatgctattttggtcctcagccaaaagcaggtgccccagggactgtc 51026843  T
Q  182 gaggacaacacaattga 198  Q
     |||||||| |||||||    
T  51026844 aaggacaacccaattga 51026860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 45940795 - 45940679
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| | |||| || ||||| ||| |||||||||||| ||||||||| || ||  ||||| | | ||||||||||| || || |||||||    
T  45940795 ggattcgaaggtgctgatgtataatcattcgaggttgaggaggagcgggaggacatgctatttgggtcctcagccaaaagcaggtgccctagagactgtc 45940696  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  45940695 gaggacaactcaattga 45940679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 2774247 - 2774158
Alignment:
Q  108 attccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattga 198  Q
    |||| ||| |||||||||||| ||||||||| || ||| ||| | ||| |||||||||| |||| |||||||||||||||||| |||||||    
T  2774247 attcgaggttgaggaggagcgggaggacatgctattttggtcttcaaccaaaagcaggt-gccccgggactgtcgaggacaacccaattga 2774158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 24576342 - 24576380
Alignment:
Q  308 ttgaataaatttgaagcgaaattgcgtattgattaaatt 346  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24576342 ttgaataaatttgaagcgaaattgcgtattgattaaatt 24576380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 1043971 - 1043879
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || || ||| |||||||||||||||| ||||| || ||| ||||| ||| ||||  ||||| | ||||||||||    
T  1043971 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgagagaacatgctattttggtcctcaaccaaaacaaggtgccgcagggactgt 1043879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 4784302 - 4784394
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||| ||||||||||||| ||||| ||| |||||||||||| | ||||||| || ||| ||||| ||| ||||| | ||| ||||||||||||    
T  4784302 gaagttgccggtgtacaatcattcgaggttgaggaggagcggggggacatgctattttggtcctcaaccaaaagaatgtgccccagggactgt 4784394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 34152245 - 34152337
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| |||   ||||| ||||||||||||    
T  34152245 gaaggtgccggtgtacaatcagtcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaatcaaggtgccccagggactgt 34152337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 42887527 - 42887443
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggccca 172  Q
    |||||||| ||||||||| || || ||| |||||||||||| |||||||||||| ||| ||||| ||| ||||| ||||| ||||    
T  42887527 gaaggtgctggtgtacaatcagtcgaggttgaggaggagcgggaggacatgttattttggtcctcaaccaaaagaaggtgcccca 42887443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 56140141 - 56140049
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||||||| |||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| ||||||||||||    
T  56140141 gaaggtgccagtgtacaatcactcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgt 56140049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 44559283 - 44559378
Alignment:
Q  85 tttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||||||||||||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| |||   ||||| ||||| ||||||    
T  44559283 tttgaaggtgccggtgtacaatcagtcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaatcaaggtgccccagagactgt 44559378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 41793883 - 41793984
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggac 187  Q
    |||||||||||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||  | |||||||||| | ||||    
T  41793883 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtaccgcagggactgtagcggac 41793982  T
Q  188 aa 189  Q
    ||    
T  41793983 aa 41793984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 49816404 - 49816477
Alignment:
Q  117 tgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaac 190  Q
    |||||||||||  ||||||||| || ||| ||||| | | ||||||||||| || |||||||||||||||||||    
T  49816404 tgaggaggagctggaggacatgctattttggtcctcagccaaaagcaggtgccctagggactgtcgaggacaac 49816477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 34528779 - 34528851
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaa 160  Q
    |||||||||||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||    
T  34528779 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaa 34528851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 43888481 - 43888553
Alignment:
Q  117 tgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaa 189  Q
    |||||||||||| ||||||||| || ||| | ||| | | ||||||||||| ||||||||||||| |||||||    
T  43888481 tgaggaggagcgggaggacatgctattttggccctcagccaaaagcaggtgccccagggactgtcaaggacaa 43888553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 6176396 - 6176446
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  6176396 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 6176446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 21016258 - 21016308
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  21016258 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 21016308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 49095871 - 49095821
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  49095871 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 49095821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 49422717 - 49422807
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggact 178  Q
    |||||||||||||||||| || || ||| |||||||||| | ||||||||| || ||| ||||| ||| ||||  ||||| |||| |||||    
T  49422717 gaaggtgccggtgtacaatcagtcgaggttgaggaggagtgggaggacatgctattttggtcctcaaccaaaacaaggtgccccaaggact 49422807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 49572345 - 49572276
Alignment:
Q  91 ggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaa 160  Q
    ||||||||||||||| || |||||| |||||||||||| || |||||| || ||| ||||| ||| ||||    
T  49572345 ggtgccggtgtacaatcagtccaggttgaggaggagcgggatgacatgctattttggtcctcaaccaaaa 49572276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 39590007 - 39589935
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaa 160  Q
    |||||||||||||||||| || |  ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||    
T  39590007 gaaggtgccggtgtacaatcacttgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaa 39589935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 130 - 337
Target Start/End: Original strand, 13130382 - 13130590
Alignment:
Q  130 gaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattgagataagcgacgagggagatgattaaataatg 229  Q
    |||||||||||| ||||||||| ||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13130382 gaggacatgttatttttgtcctcaaccaaaagcaggtgtgccagggactgtcgaggacaacacaattgagataagcgacgagggagatgattaaataatg 13130481  T
Q  230 taattgattgtaataatcttgaatatg-cgcgcattttgaaacattttgttattgaataatcttgaataaacttgcattttgaataaatttgaagcgaaa 328  Q
    |||| ||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13130482 taatggattgtagtaatcttgaatatgccgcacattttgaaacattttgttattgaataatcttgaataaacttgcattttgaataaatttgaagcgaaa 13130581  T
Q  329 ttgcgtatt 337  Q
    |||||||||    
T  13130582 ttgcgtatt 13130590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 7401027 - 7400849
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttccatnnnnnnnnnnggatttgaaggtgccggtgtacaaccattccaggct 117  Q
    ||||||||| |||||  ||||||||||||||| |||||||||| |||||||| |           |||| ||| |||||||| |||||||||||||||||    
T  7401027 gaagaaagctaaatcgactgtgacatggcacagaatcgaatgtaatggttccgttaaaaaaat--gattcgaaagtgccggtttacaaccattccaggct 7400930  T
Q  118 gaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattga 198  Q
    |||||||||||  ||||||||||| ||  ||||| ||| |||| |||||| | || ||||||||||||||||| |||||||    
T  7400929 gaggaggagcggaaggacatgttatttcggtcctcaaccaaaatcaggtgcctcaaggactgtcgaggacaacccaattga 7400849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 226
Target Start/End: Complemental strand, 10978540 - 10978400
Alignment:
Q  86 ttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgagg 185  Q
    |||||||||||||||||||| |||| || | ||||||||||||  ||||| ||||| ||| ||||| ||| ||||||||||  |||||| |||| |||||    
T  10978540 ttgaaggtgccggtgtacaatcattacatgatgaggaggagcggaaggacttgttattttggtcctcaaccaaaagcaggttccccaggaactgacgagg 10978441  T
Q  186 acaacacaattgagataagcgacgagggagatgattaaata 226  Q
    ||||| |||||||  |  | |||||||||||| ||||||||    
T  10978440 acaacccaattgaattttgtgacgagggagataattaaata 10978400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 1972630 - 1972515
Alignment:
Q  83 gatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcg 182  Q
    |||| |||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| ||  ||||||||||| ||||||||||||||    
T  1972630 gattcgaaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcaagcaaaagcaggtgccccagggactgtcg 1972531  T
Q  183 aggacaacacaattga 198  Q
    |||||||  |||||||    
T  1972530 aggacaaaccaattga 1972515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 7484449 - 7484564
Alignment:
Q  83 gatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcg 182  Q
    |||| |||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | ||||||||||| ||||||||||||||    
T  7484449 gattcgaaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccccagggactgtcg 7484548  T
Q  183 aggacaacacaattga 198  Q
    |||| ||| |||||||    
T  7484549 aggataacccaattga 7484564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 6792402 - 6792518
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | |||||||| || || ||||||||||    
T  6792402 ggattcgaaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaagcagatgccctagggactgtc 6792501  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  6792502 gaggacaacccaattga 6792518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 13130291 - 13130340
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggtt 67  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13130291 gaagaaagcaaaatcccgtgtgacatggcacaaaatcgaatgtgatggtt 13130340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 225
Target Start/End: Original strand, 8531265 - 8531381
Alignment:
Q  109 ttccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattgagataagcgac 208  Q
    ||||||||||||||||||||  | ||| ||||| ||| ||||| ||| ||||||| ||| || |||||| ||||| |||||| |||||||  || | |||    
T  8531265 ttccaggctgaggaggagcggaatgacttgttactttggtcctcaaccaaaagcaagtgccctagggaccgtcgacgacaacccaattgacttatgtgac 8531364  T
Q  209 gagggagatgattaaat 225  Q
    |||| ||||||||||||    
T  8531365 gaggaagatgattaaat 8531381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 18309507 - 18309415
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || |||||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| || |||||||||    
T  18309507 gaaggtgccggtgtacaatcagtccaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgcccaagggactgt 18309415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 20199593 - 20199495
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||| ||||||| |||||||||| || |||||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  | ||| ||||||||||||    
T  20199593 ggattcgaaggtgtcggtgtacaatcagtccaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaagtgccccagggactgt 20199495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 35927042 - 35927132
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggact 178  Q
    |||||||||| ||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||| ||||| ||||||||||    
T  35927042 gaaggtgccgatgtacaatcagtcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaagaaggtgccccagggact 35927132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 3602588 - 3602488
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggac 187  Q
    ||||||| |||||||||| || |||||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  |||| ||||||||||||| | ||||    
T  3602588 gaaggtggcggtgtacaatcagtccaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggt-gcccagggactgtagcggac 3602490  T
Q  188 aa 189  Q
    ||    
T  3602489 aa 3602488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 4723053 - 4723161
Alignment:
Q  89 aaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggaca 188  Q
    ||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | ||||||||| | |||| || ||||||||||||    
T  4723053 aaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggcgccccaagg-ctgtcgaggaca 4723151  T
Q  189 acacaattga 198  Q
    || |||||||    
T  4723152 acccaattga 4723161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 190
Target Start/End: Complemental strand, 1696062 - 1695954
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||  |||||| ||  |||| ||| |||||||||||| ||||||||| || ||| | ||| | | ||||||||||| |||| ||||||||    
T  1696062 ggattcgaaggtgttggtgtataatgattcgaggttgaggaggagcgggaggacatgctattttggccctcagccaaaagcaggtgccccaaggactgtc 1695963  T
Q  182 gaggacaac 190  Q
    |||||||||    
T  1695962 gaggacaac 1695954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 36349259 - 36349366
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    |||| ||||||||| |||||| || ||||| ||| |||||| ||||| ||||||||| |  ||| ||||| | | |||||||||||  ||||||||||||    
T  36349259 ggatctgaaggtgctggtgtataatcattcgaggttgaggaagagcgggaggacatgctt-tttggtcctcagccaaaagcaggtgctccagggactgtc 36349357  T
Q  182 gaggacaac 190  Q
    |||||||||    
T  36349358 gaggacaac 36349366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 31239229 - 31239143
Alignment:
Q  112 caggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattga 198  Q
    ||||||||||||||| |  |||||||| || ||| ||||| ||| ||||||| ||| || ||||||||| ||||||||| |||||||    
T  31239229 caggctgaggaggagtggaaggacatgctattttggtcctcaaccaaaagcacgtgccctagggactgtggaggacaacccaattga 31239143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 30710727 - 30710674
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgtta 141  Q
    ||||||||| |||||||| || || ||| |||||||||||||||||||||||||    
T  30710727 gaaggtgccagtgtacaatcactcgaggttgaggaggagcgagaggacatgtta 30710674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 25499328 - 25499236
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || ||||||  ||||||||||| ||||||||  || ||| ||||| ||| ||||  ||||| |||| |||||||    
T  25499328 gaaggtgccggtgtacaatcagtccaggtggaggaggagcgggaggacatactattttggtcctcaaccaaaacaaggtgccccaaggactgt 25499236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 34682889 - 34682981
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||||| |||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||  ||||||||||||    
T  34682889 gaaggtgacggtgtacaatcagtcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggttccccagggactgt 34682981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 35566518 - 35566426
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||||||| ||||||||||| || ||| ||||| |||||| ||||||||| || ||| ||||| ||| ||||  ||||| | ||||||||||    
T  35566518 gaaggtgccagtgtacaaccagtcgaggttgaggcggagcgtgaggacatgctattttggtcctcaaccaaaacaaggtgcctcagggactgt 35566426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 6312 - 6362
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  6312 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 6362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 11347928 - 11347878
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  11347928 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 11347878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 19035757 - 19035807
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  19035757 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 19035807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 11028578 - 11028525
Alignment:
Q  85 tttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||| |||||||| || || ||| |||||||||||| |||||||||    
T  11028578 tttgaaggtgccagtgtacaatcactcgaggttgaggaggagcgggaggacatg 11028525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 38855282 - 38855229
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgtta 141  Q
    ||||||||| |||||||| || || ||| |||||||||||| ||||||||||||    
T  38855282 gaaggtgccagtgtacaatcactcgaggttgaggaggagcgggaggacatgtta 38855229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 31488995 - 31488927
Alignment:
Q  157 aaaagcaggtggcccagggactgtcgaggacaacacaattgagataagcgacgagggagatgattaaat 225  Q
    ||||||||||| |||||| || ||  |||||||| |||||||  |||| || |||||||||||||||||    
T  31488995 aaaagcaggtgtcccaggaaccgttaaggacaacccaattgacttaagtgaagagggagatgattaaat 31488927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 5e-75; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 115 - 340
Target Start/End: Original strand, 17464485 - 17464711
Alignment:
Q  115 gctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattgagataagcgacgaggga 214  Q
    |||||||||||||| |||||||||||| ||| ||||| ||| ||||||||||| |||||||||||| || |||||| |||||||||||||||||||||||    
T  17464485 gctgaggaggagcgggaggacatgttattttggtcctcaaccaaaagcaggtgtcccagggactgttgaagacaacccaattgagataagcgacgaggga 17464584  T
Q  215 gatgattaaataatgtaattgattgtaataatcttgaatatg-cgcgcattttgaaacattttgttattgaataatcttgaataaacttgcattttgaat 313  Q
    ||| ||||||||||||||| | ||||||||||||||||| || ||| ||||||| |||||||||||||||||||||||| ||||||||||  ||||||||    
T  17464585 gataattaaataatgtaatggcttgtaataatcttgaatttgccgcacattttggaacattttgttattgaataatctttaataaacttgtgttttgaat 17464684  T
Q  314 aaatttgaagcgaaattgcgtattgat 340  Q
    |||||||||| ||||||||||||||||    
T  17464685 aaatttgaagtgaaattgcgtattgat 17464711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 21863873 - 21864015
Alignment:
Q  84 atttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcga 183  Q
    |||||||||||||| ||||||| ||||||| | ||||||| ||||  ||||||||||| ||| |||||  |  ||||||| ||| ||||| |||||||||    
T  21863873 atttgaaggtgccgatgtacaatcattccaagttgaggagaagcggaaggacatgttactttggtcctcgatcaaaagcatgtgccccagagactgtcga 21863972  T
Q  184 ggacaacacaattgagataagcgacgagggagatgattaaata 226  Q
    ||||||| |||||||  || | ||||||| |||||||||||||    
T  21863973 ggacaacccaattgacttatgtgacgaggaagatgattaaata 21864015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 14485933 - 14486073
Alignment:
Q  84 atttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcga 183  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||| ||||||| ||||| ||| || || ||| ||||||||||| || ||||| | ||||    
T  14485933 atttgaaggtgccagtgtacaatcattccaggttgaggaggagc-agaggacttgttattttggttctcaaccaaaagcaggtgccctagggaatatcga 14486031  T
Q  184 ggacaacacaattgagataagcgacgagggagatgattaaat 225  Q
    |||||||  ||||||  |||||||||| | |||| |||||||    
T  14486032 ggacaacctaattgacttaagcgacgaagaagataattaaat 14486073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 30763946 - 30764052
Alignment:
Q  92 gtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaaca 191  Q
    |||||||| ||||||||||||||||||||||||||||  | ||||||||| ||  ||||| ||| ||||||  ||| |||| |||||||||||||||||     
T  30763946 gtgccggtttacaaccattccaggctgaggaggagcggaatgacatgttatttcggtcctcaaccaaaagcgagtgccccatggactgtcgaggacaacc 30764045  T
Q  192 caattga 198  Q
    |||||||    
T  30764046 caattga 30764052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 12398049 - 12397934
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||  |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | |||||||||| ||||||||||||||    
T  12398049 ggattcgaaggtgttggtgtataatcattcgaggttgaggaggagcgggaggacatgatattttggtcctcagccaaaagcaggt-gcccagggactgtc 12397951  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  12397950 gaggacaacccaattga 12397934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 223
Target Start/End: Original strand, 11181798 - 11181917
Alignment:
Q  104 aaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattgagataa 203  Q
    ||||||||||| |||||||||||||  | ||||||||| ||| ||||| ||| ||||||||||| | |  ||| ||||||||||||| |||||||  |||    
T  11181798 aaccattccagactgaggaggagcggaatgacatgttattttggtcctcaaccaaaagcaggtgccactaggattgtcgaggacaacccaattgacttaa 11181897  T
Q  204 gcgacgagggagatgattaa 223  Q
    ||||||| |||||| |||||    
T  11181898 gcgacgaaggagataattaa 11181917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 32133624 - 32133731
Alignment:
Q  83 gatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcg 182  Q
    ||||||||||||| ||||| ||| || || ||||||| |||||| ||||||||||| || ||| ||||| | | ||||||||||  ||||||||||||||    
T  32133624 gatttgaaggtgctggtgtgcaatcagtcgaggctgaagaggagtgagaggacatgctattttggtcctcagccaaaagcaggttccccagggactgtcg 32133723  T
Q  183 aggacaac 190  Q
    | ||||||    
T  32133724 atgacaac 32133731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 33201534 - 33201427
Alignment:
Q  83 gatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcg 182  Q
    |||| ||| ||||||||||| ||||||||||||||||||| |||||  |||||||||||  |  ||||| ||| |||| ||||||  ||||||| |||||    
T  33201534 gattcgaatgtgccggtgtataaccattccaggctgaggaagagcggaaggacatgttatatcggtcctcaaccaaaatcaggtgcgccagggaatgtcg 33201435  T
Q  183 aggacaac 190  Q
    ||||||||    
T  33201434 aggacaac 33201427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 34802145 - 34802236
Alignment:
Q  89 aaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||||||||||||||| || || ||| |||||||||||| ||||||||| || ||||||||| ||| ||||  ||||| ||||||||||||    
T  34802145 aaggtgccggtgtacaatcagtcgaggttgaggaggagcgggaggacatgctatttttgtcctcaaccaaaacaaggtgccccagggactgt 34802236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 13404058 - 13403966
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||| ||||||| || || ||| |||||||||||||||||||||| || ||  ||||| ||| ||||  ||||| ||||||||||||    
T  13404058 gaaggtgccgatgtacaatcagtcgaggttgaggaggagcgagaggacatgctatttcggtcctcaaccaaaaaaaggtgccccagggactgt 13403966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 20241306 - 20241422
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| ||||||||||||||| || | ||||||  |||||||||||  ||||  ||| || ||| ||||| ||| ||||||||||  || |||||||||     
T  20241306 ggattcgaaggtgccggtgtataatcgttccagtttgaggaggagcaggaggttatgctattttggtcctcaaccaaaagcaggttcccaagggactgtt 20241405  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  20241406 gaggacaacccaattga 20241422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 22135290 - 22135406
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| ||||||||||||||| || | ||||||  |||||||||||  ||||  ||| || ||| ||||| ||| ||||||||||  || |||||||||     
T  22135290 ggattcgaaggtgccggtgtataatcgttccagtttgaggaggagcaggaggttatgctattttggtcctcaaccaaaagcaggttcccaagggactgtt 22135389  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  22135390 gaggacaacccaattga 22135406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 22142643 - 22142759
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| ||||||||||||||| || | ||||||  |||||||||||  ||||  ||| || ||| ||||| ||| ||||||||||  || |||||||||     
T  22142643 ggattcgaaggtgccggtgtataatcgttccagtttgaggaggagcaggaggttatgctattttggtcctcaaccaaaagcaggttcccaagggactgtt 22142742  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  22142743 gaggacaacccaattga 22142759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 30763870 - 30763921
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttcc 69  Q
    ||||||||| |||||  ||||||||||||||| |||||||||||||||||||    
T  30763870 gaagaaagctaaatcgactgtgacatggcacagaatcgaatgtgatggttcc 30763921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 13616862 - 13616952
Alignment:
Q  90 aggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||| |||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| ||||||||||||    
T  13616862 aggtgtcggtgtacaatcactcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgt 13616952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 32026584 - 32026676
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||||||||||||||||  | || ||| |||||||||||| | ||||||| || ||| ||||| ||| ||||  ||||| ||||||||||||    
T  32026584 gaaggtgccggtgtacaattagtcgaggttgaggaggagcgggtggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgt 32026676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 32036643 - 32036735
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||||||||||||||||  | || ||| |||||||||||| | ||||||| || ||| ||||| ||| ||||  ||||| ||||||||||||    
T  32036643 gaaggtgccggtgtacaattagtcgaggttgaggaggagcgggtggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgt 32036735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 6206614 - 6206564
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  6206614 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 6206564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 11693581 - 11693531
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  11693581 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 11693531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 27641304 - 27641254
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  27641304 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 27641254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 21863807 - 21863855
Alignment:
Q  21 gaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttcc 69  Q
    |||||| |||||  ||||||||||||||| |||||||| ||||||||||    
T  21863807 gaaagcgaaatcgactgtgacatggcacataatcgaatttgatggttcc 21863855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 6e-62; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 3379953 - 3380271
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttccatnnnnnnnnnnggatttgaaggtgccggtgtacaaccattccaggct 117  Q
    |||| |||||||||| | ||||||||||||||||||||||||| ||||||||||            | |||||||||||| |||| ||  | ||||| ||    
T  3379953 gaagcaagcaaaatcacttgtgacatggcacaaaatcgaatgtaatggttccataaaaaaaaa---aattgaaggtgccgatgtataattagtccagact 3380049  T
Q  118 gaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacaca-attgagataagcgacgagggaga 216  Q
    ||||||||||| ||||||||| || ||| ||||| ||| ||||||||||| | || ||||||||||| |||||    ||||||||||||||||||| |||    
T  3380050 gaggaggagcgggaggacatgctattttggtcctcaaccaaaagcaggtgccacaaggactgtcgagcacaacctttattgagataagcgacgaggcaga 3380149  T
Q  217 tgattaaataatgtaattgattgtaataatcttgaatatgc-gcgcattttgaaacattttgttattgaataatcttgaataaacttgcattttgaataa 315  Q
    | |||||||||||||||   ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||| ||||| | |||| |||    
T  3380150 tcattaaataatgtaatgacttgtaataatcttgaatatgccgcacattttggaacattttgttattgaataatcttgaataagcttgcgtattgattaa 3380249  T
Q  316 atttgaagcgaaattgcgtatt 337  Q
    ||| ||||||||||||||||||    
T  3380250 attcgaagcgaaattgcgtatt 3380271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 4230789 - 4230611
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttccatnnnnnnnnnnggatttgaaggtgccggtgtacaaccattccaggct 117  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |           |||| |||||||||||||||||| |||||||||      
T  4230789 gaagaaagcaaaatcgcctatgacatggcacgaaatcgaatgtgatggttccgtaaaaaaaaa--gattcgaaggtgccggtgtacaatcattccaggtg 4230692  T
Q  118 gaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattga 198  Q
    ||||||||||| ||||||||| || |||  |||| ||| ||||||||||| |||||||||||||||||||||| |||||||    
T  4230691 gaggaggagcgggaggacatgctattttgatcctcaaccaaaagcaggtgccccagggactgtcgaggacaacccaattga 4230611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 1641574 - 1641744
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttccatnnnnnnnnnnggatttgaaggtgccggtgtacaaccattccaggct 117  Q
    |||||||| |||||| ||| |||||||||||| ||| ||||||||||||||| |          |||||||||||||||||||||||| ||  | ||| |    
T  1641574 gaagaaagaaaaatcgcctatgacatggcacataattgaatgtgatggttccgtaaaaaagaa-ggatttgaaggtgccggtgtacaatcaaacgaggtt 1641672  T
Q  118 gaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaa 189  Q
    ||||||||||| |||||||||||| ||| ||||| ||| ||||| ||||| |||||| |||| |||||||||    
T  1641673 gaggaggagcgggaggacatgttattttggtcctcaaccaaaagaaggtgccccaggaactggcgaggacaa 1641744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 190
Target Start/End: Complemental strand, 22292093 - 22291992
Alignment:
Q  89 aaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggaca 188  Q
    ||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | ||||||||||| ||||||||||||||||||||    
T  22292093 aaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctgagccaaaagcaggtgccccagggactgtcgaggaca 22291994  T
Q  189 ac 190  Q
    ||    
T  22291993 ac 22291992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 17184453 - 17184338
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || | ||||||||| | ||||||||||| |||| ||| ||||    
T  17184453 ggattcgaaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgcta-tattgtccttagccaaaagcaggtgccccatggattgtc 17184355  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  17184354 gaggacaacccaattga 17184338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 42736244 - 42736129
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    |||||||||| ||| |||||| || ||||| ||| |||||||||||| ||| ||||| || ||| ||||| | | |||||||||| ||||||||||||||    
T  42736244 ggatttgaagatgctggtgtataatcattcgaggttgaggaggagcgggagaacatgctattttggtcctcagccaaaagcaggt-gcccagggactgtc 42736146  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  42736145 gaggacaacccaattga 42736129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 43350347 - 43350463
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| ||| |||| |||||| || ||||  ||| |||||||||||| ||||||||| || ||| ||| | ||| ||||||||||| |||||||||||||    
T  43350347 ggattcgaatgtgctggtgtataatcatttgaggttgaggaggagcgggaggacatgctattttggtcttcaaccaaaagcaggtgccccagggactgtc 43350446  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  43350447 gaggacaacccaattga 43350463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 16885955 - 16886095
Alignment:
Q  84 atttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcga 183  Q
    ||||||||||||||||| |||| || |||||||||| ||| ||||| ||||| ||||| ||| ||||| ||| ||||| ||||| | |||| ||| ||||    
T  16885955 atttgaaggtgccggtgaacaatcagtccaggctgaagag-agcgaaaggacttgttattttggtcctcaaccaaaagtaggtgccacaggaactctcga 16886053  T
Q  184 ggacaacacaattgagataagcgacgagggagatgattaaat 225  Q
    ||||||| |||||||  || | || || ||||||||||||||    
T  16886054 ggacaacccaattgacttatgtgatgaaggagatgattaaat 16886095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 15900362 - 15900469
Alignment:
Q  83 gatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcg 182  Q
    |||| |||||||| ||||||||| || || |||||||||||||| | ||||| ||| || ||| ||||| |   ||||||||||| ||||||||||||||    
T  15900362 gattcgaaggtgctggtgtacaatcagtcgaggctgaggaggagtgggaggatatgctattttggtcctcagtcaaaagcaggtgccccagggactgtcg 15900461  T
Q  183 aggacaac 190  Q
    ||||||||    
T  15900462 aggacaac 15900469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 20877016 - 20877087
Alignment:
Q  119 aggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaac 190  Q
    |||||||||| ||||||||| || ||| ||||| ||| ||||||||||| ||||||||||||||||||||||    
T  20877016 aggaggagcgggaggacatgctattttggtcctcaaccaaaagcaggtgccccagggactgtcgaggacaac 20877087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 28113364 - 28113459
Alignment:
Q  85 tttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||||||||||||||||||| || || ||| |||||||||||| |||||||||||| ||| ||||| ||| ||||  ||||| | ||||||||||    
T  28113364 tttgaaggtgccggtgtacaatcagtcgaggttgaggaggagcgggaggacatgttattttggtcctcaaccaaaacaaggtgccacagggactgt 28113459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 21186255 - 21186347
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||| ||||| || |||||| |||||||||||| |||||||||||| ||| ||||| ||| ||||  ||||| || |||||||||    
T  21186255 gaaggtgccggtatacaatcaatccaggttgaggaggagcgggaggacatgttattttggtcctcaaccaaaacaaggtgccctagggactgt 21186347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 28978194 - 28978266
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaa 160  Q
    |||||| ||||||||||| || || ||| |||||||||||| |||||||||||| ||| ||||| ||||||||    
T  28978194 gaaggtcccggtgtacaatcactcgaggttgaggaggagcgggaggacatgttattttggtcctcaacaaaaa 28978266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 36392782 - 36392874
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||  ||||||| || |||||| |||||||||||| |||||||||||| ||| ||||| ||| ||||  ||||| | ||||||||||    
T  36392782 gaaggtgccattgtacaatcagtccaggttgaggaggagcgggaggacatgttattttggtcctcaaccaaaacaaggtgcctcagggactgt 36392874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 45362254 - 45362346
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||| ||||| | || |||||||    
T  45362254 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaagaaggtgccgcaaggactgt 45362346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 48271899 - 48271807
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || || ||| |||||||||||| || |||||| || ||| ||||| ||| ||||  ||||| ||||||||||||    
T  48271899 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggatgacatgctattttggtcctcaaccaaaacaaggtgccccagggactgt 48271807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 42683645 - 42683559
Alignment:
Q  94 gccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| ||||||||||||    
T  42683645 gccggtgtacaatcactcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgt 42683559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 27316986 - 27317050
Alignment:
Q  157 aaaagcaggtggcccagggactgtcgaggacaacacaattgagataagcgacgagggagatgatt 221  Q
    ||||||||||| || ||| |||||| |||||||| |||||||  ||||||| |||||||||||||    
T  27316986 aaaagcaggtgccctaggaactgtctaggacaacccaattgacttaagcgatgagggagatgatt 27317050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 41934488 - 41934555
Alignment:
Q  157 aaaagcaggtggcccagggactgtcgaggacaacacaattgagataagcgacgagggagatgattaaat 225  Q
    ||||||||||| |||||| ||||||||||||||| |||||||  ||||  |||||||| ||||||||||    
T  41934488 aaaagcaggtg-cccaggaactgtcgaggacaacccaattgacttaagtaacgagggaaatgattaaat 41934555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 9366198 - 9366248
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  9366198 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 9366248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 20565887 - 20565837
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  20565887 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 20565837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 42504336 - 42504446
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggac 187  Q
    ||||||||| |||||||| || || ||| |||||||||||| ||||||||| || ||  ||||| ||| ||||| ||||  | |||||||||| | ||||    
T  42504336 gaaggtgccagtgtacaatcactcgaggttgaggaggagcgggaggacatgctatttcggtcctcaaccaaaagaaggtaccgcagggactgtagcggac 42504435  T
Q  188 aacacaattga 198  Q
    ||  |||||||    
T  42504436 aagccaattga 42504446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 48194213 - 48194123
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggact 178  Q
    |||||||| ||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| | ||||||||    
T  48194213 gaaggtgctggtgtacaatcactcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccgcagggact 48194123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 34142099 - 34142007
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||||||||| |||||| || || ||| |||||||||||| || |||||| || ||| ||||| ||| ||||  ||||| | ||||||||||    
T  34142099 gaaggtgccggagtacaatcactcgaggttgaggaggagcgggatgacatgctattttggtcctcaaccaaaacaaggtgccacagggactgt 34142007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 41623329 - 41623237
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||||| |||||||||| || || ||| ||||||||||||  |||||||| || ||| ||||| | | ||||  ||||| ||||||||||||    
T  41623329 gaaggtgtcggtgtacaatcagtcgaggttgaggaggagcggaaggacatgctattttggtcctcatccaaaacaaggtgccccagggactgt 41623237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 46861156 - 46861248
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || || ||  |||||||||| | ||||| ||| || ||| ||||| ||| ||||  ||||| ||||||||||||    
T  46861156 gaaggtgccggtgtacaatcactcgagattgaggaggagtgggaggaaatgctattttggtcctcaaccaaaacaaggtgccccagggactgt 46861248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 1574 - 1711
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggac 187  Q
    |||||||||| ||||||| || ||||| |||||||||||||  ||||| ||||| ||| ||||| ||| |||||||||||||||||||||||| ||| ||    
T  1574 gaaggtgccgatgtacaatcagtccagactgaggaggagcggaaggacttgttattttagtcctcaactaaaagcaggtggcccagggactgttgagtac 1673  T
Q  188 aacacaattgagataagcgacgagggagatgattaaat 225  Q
    ||| ||||||   |||||||||||||| ||||||||||    
T  1674 aacccaattgccttaagcgacgagggacatgattaaat 1711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 16531083 - 16531281
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttccatnnnnnnnnnnggatttgaaggtgccggtgtacaaccattccaggct 117  Q
    |||||||||||||||   | |||||||||| | ||||||||||||||||||| |          ||||||||||||||||||||||||  |||| |||||    
T  16531083 gaagaaagcaaaatcgtttatgacatggcaaagaatcgaatgtgatggttccgtaaaaaagaa-ggatttgaaggtgccggtgtacaattattctaggct 16531181  T
Q  118 gaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattgagataagcgacgagggagat 217  Q
    ||||||||| | ||||||||| || |||  |||| ||| ||||||||||| |||| ||||||||||||||||| |||||||| | || ||||||| ||||    
T  16531182 gaggaggagtgggaggacatgctattttgatcctcaaccaaaagcaggtgccccaaggactgtcgaggacaacccaattgagttcagtgacgaggaagat 16531281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 23343770 - 23343655
Alignment:
Q  83 gatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcg 182  Q
    ||||||||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||||||||| |||||||| |||||    
T  23343770 gatttgaaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaagcaggtgccccagggattgtcg 23343671  T
Q  183 aggacaacacaattga 198  Q
    |||||||| |||||||    
T  23343670 aggacaacccaattga 23343655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 35585858 - 35585974
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | ||||||||||| |||||||||||||    
T  35585858 ggattcgaaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccccagggactgtc 35585957  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  35585958 gaggacaacccaattga 35585974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 38044160 - 38044276
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||  |||||| || ||||| ||| |||||||||||| ||||||||| || ||||||||| ||| ||||||||||| | |||||||||||    
T  38044160 ggattcgaaggtgttggtgtataatcattcgaggttgaggaggagcgggaggacatgctatttttgtcctcaaccaaaagcaggtgcctcagggactgtc 38044259  T
Q  182 gaggacaacacaattga 198  Q
    || |||||| |||||||    
T  38044260 gacgacaacccaattga 38044276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 15355740 - 15355856
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | ||||||||||  |||||||||| ||    
T  15355740 ggattcgaaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtaccccagggactatc 15355839  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  15355840 gaggacaacccaattga 15355856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 37779400 - 37779284
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| ||| |||| |||||| || ||||| ||| |||||||||| | ||||||||| || ||| ||||| | | ||||||||||| |||||||||||||    
T  37779400 ggattcgaaagtgctggtgtataatcattcgaggttgaggaggagtgggaggacatgctattttggtcctcagccaaaagcaggtgccccagggactgtc 37779301  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  37779300 gaggacaacccaattga 37779284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 35186255 - 35186139
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||  |||||| || ||||| ||| |||||||||||| ||| ||||| || ||| || || | | ||||||| ||| |||||||||||||    
T  35186255 ggattcgaaggtggtggtgtataatcattcgaggttgaggaggagcgggagaacatgctattttggttctcagccaaaagcaagtgccccagggactgtc 35186156  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  35186155 gaggacaacccaattga 35186139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 39856199 - 39856315
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||  |||||| || ||||| ||| |||||||||||  ||||||||| || ||| ||||| | | ||||||||||| |||||||||||||    
T  39856199 ggattcgaaggtgttggtgtataatcattcgaggttgaggaggagcaggaggacatgctattttggtcctcagccaaaagcaggtgccccagggactgtc 39856298  T
Q  182 gaggacaacacaattga 198  Q
    || || ||| |||||||    
T  39856299 gaagaaaacccaattga 39856315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 41803474 - 41803382
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||||| ||| ||||| ||| ||||  ||||| |||| |||||||    
T  41803474 gaaggtgccggtgtacaatcagtcgaggttgaggaggagcgggaggacatgttattttggtcctcaaccaaaacaaggtgtcccaaggactgt 41803382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 49260635 - 49260751
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| |||||| ||  |||| ||| |||||| |||||  |||||||| || ||| ||||| | | ||||||||||  |||||||||||||    
T  49260635 ggattcgaaggtgctggtgtataatgattcgaggttgaggatgagcggaaggacatgctattttggtcctcagccaaaagcaggtaccccagggactgtc 49260734  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  49260735 gaggacaacccaattga 49260751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 17685310 - 17685401
Alignment:
Q  107 cattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattga 198  Q
    ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | ||||||||||| || ||||||||||||| ||||| |||||||    
T  17685310 cattcgaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccctagggactgtcgagtacaacccaattga 17685401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 35525152 - 35525243
Alignment:
Q  85 tttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccaggga 176  Q
    ||||||||||||||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| ||||||||    
T  35525152 tttgaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccccaggga 35525243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 12790229 - 12790334
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    |||||||||||||| |||||| || ||||| ||| |||||||  |   ||||||||| || ||| ||||| | | ||||||||||| |||||||||||||    
T  12790229 ggatttgaaggtgctggtgtataatcattcgaggttgaggagtgg---gaggacatgctattttggtcctcagccaaaagcaggtgccccagggactgtc 12790325  T
Q  182 gaggacaac 190  Q
    |||||||||    
T  12790326 gaggacaac 12790334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 40532368 - 40532441
Alignment:
Q  117 tgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaac 190  Q
    |||||||||||| ||||||||| || ||||||||| | | ||||||||||| | ||||||| ||||||||||||    
T  40532368 tgaggaggagcgggaggacatgctatttttgtcctcagccaaaagcaggtgcctcagggaccgtcgaggacaac 40532441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 14172718 - 14172802
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggccca 172  Q
    |||||||||||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||| ||||| ||||    
T  14172718 gaaggtgccggtgtacaatcagtcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaagaaggtgcccca 14172802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 24269324 - 24269439
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| |||||| | | |||| ||| |||||||||||| ||||||||| || ||| |||||   | ||||||||||| || ||||||||||    
T  24269324 ggattcgaaggtgctggtgtatatc-attcgaggttgaggaggagcgggaggacatgctattttggtcctcggccaaaagcaggtgccctagggactgtc 24269422  T
Q  182 gaggacaacacaattga 198  Q
    ||||||| | |||||||    
T  24269423 gaggacagctcaattga 24269439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 36911128 - 36911036
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || || ||| |||| ||||||| ||||||||| || ||| ||||| ||| ||||  ||||| ||||||||||||    
T  36911128 gaaggtgccggtgtacaatcagtcgaggttgagaaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgt 36911036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 46142413 - 46142505
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || | |||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| ||| ||||||||    
T  46142413 gaaggtgccggtgtacaatcagttcaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgcccctgggactgt 46142505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 13974177 - 13974082
Alignment:
Q  85 tttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||||||||||||||||||| || |||||| ||||||||||   ||||||||| || |||  |||| ||| ||||  ||||| ||||||||||||    
T  13974177 tttgaaggtgccggtgtacaatcactccaggttgaggaggagatggaggacatgctattttgttcctcaaccaaaacaaggtgccccagggactgt 13974082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 14771756 - 14771843
Alignment:
Q  111 ccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattga 198  Q
    |||||||||||||||||| ||||||||| || ||| || || ||| ||||||||||| |||| ||| | ||||||| ||| |||||||    
T  14771756 ccaggctgaggaggagcgggaggacatgatattttggttctcaaccaaaagcaggtgccccaaggaatatcgaggataacccaattga 14771843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 18974555 - 18974457
Alignment:
Q  92 gtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaac 190  Q
    |||||||||||||| || ||| || |||||||||||| ||||||||| || ||  ||||| ||| ||||  ||||| |||||||||||| | |||||||    
T  18974555 gtgccggtgtacaaacagtcctggttgaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtgccccagggactgtagcggacaac 18974457  T

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Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 42570749 - 42570851
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggac 187  Q
    ||||||||||| |||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| | |||||||||| |||| |    
T  42570749 gaaggtgccggcgtacaatcagtcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgcctcagggactgtagagggc 42570848  T
Q  188 aac 190  Q
    |||    
T  42570849 aac 42570851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 26494706 - 26494614
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||| ||||||||| || || | | |||||||||||| ||||||||| || ||| ||||| ||| ||||| |||||  |||||||||||    
T  26494706 gaaggtgcaggtgtacaatcagtcgaagttgaggaggagcgggaggacatgctattttggtcctcaaccaaaagaaggtgctccagggactgt 26494614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 26634166 - 26634238
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaa 160  Q
    |||||||||||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||    
T  26634166 gaaggtgccggtgtacaatcagtcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaa 26634238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 29437181 - 29437090
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||| ||||||||| || || | | |||||||||||| |||||||||||| ||| ||||| ||| ||||  |||| |||||||||||||    
T  29437181 gaaggtgctggtgtacaatcactcgaagttgaggaggagcgggaggacatgttattttggtcctcaaccaaaacaaggt-gcccagggactgt 29437090  T

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Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 51271051 - 51270959
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||  || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| | ||||||||||    
T  51271051 gaaggtgccggtgtacattcactcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccgcagggactgt 51270959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 49428587 - 49428537
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  49428587 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 49428537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 19261466 - 19261523
Alignment:
Q  83 gatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgtt 140  Q
    |||| |||||| |||||||||||| | ||||| |||||||||||||  ||||||||||    
T  19261466 gattcgaaggttccggtgtacaactagtccagactgaggaggagcggaaggacatgtt 19261523  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 24363025 - 24363117
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || ||  || |||||||||| | ||||| ||| || ||| ||||| ||| ||||| |||||  |||||||||||    
T  24363025 gaaggtgccggtgtacaatcagtcggggttgaggaggagtgggaggatatgctattttggtcctcaaccaaaagaaggtgctccagggactgt 24363117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 29761139 - 29761230
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||| ||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| | ||||||||||    
T  29761139 gaaggtgccg-tgtacaatcactcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccgcagggactgt 29761230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 48227759 - 48227687
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaa 160  Q
    |||||||||| ||||||| |  || ||| |||||||||||||||||||||| || ||| ||||| ||| ||||    
T  48227759 gaaggtgccgatgtacaatcgctcgaggttgaggaggagcgagaggacatgctattttggtcctcaaccaaaa 48227687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 50341398 - 50341513
Alignment:
Q  83 gatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcg 182  Q
    |||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||| || | |||| ||| ||||||||||| || |||||||||||    
T  50341398 gatttgaaagtaccggtgtacaaccattccaggctgaggaggagcggaaggacatgttatttctatcctaaaccaaaagcaggtgccctagggactgtcg 50341497  T
Q  183 aggacaacacaattga 198  Q
    |||||||  |||||||    
T  50341498 aggacaatccaattga 50341513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 269 - 351
Target Start/End: Complemental strand, 18441562 - 18441478
Alignment:
Q  269 aacattttgttattgaataatcttgaataaacttgca--ttttgaataaatttgaagcgaaattgcgtattgattaaattcaaag 351  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||| |||||| |||||||||||    
T  18441562 aacattttgttattgaataatcttgaataaacttgaagattttgaataaatttgaagcgaaattgcatattgaataaattcaaag 18441478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 269 - 351
Target Start/End: Complemental strand, 19486636 - 19486552
Alignment:
Q  269 aacattttgttattgaataatcttgaataaacttgca--ttttgaataaatttgaagcgaaattgcgtattgattaaattcaaag 351  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||| |||||| |||||||||||    
T  19486636 aacattttgttattgaataatcttgaataaacttgaagattttgaataaatttgaagcgaaattgcatattgaataaattcaaag 19486552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 27096582 - 27096761
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttccatnnnnnnnnnnggatttgaaggtgccggtgtacaaccattccaggct 117  Q
    ||||||||||||||| | ||||||||| ||| ||||||||||||||||||||||          ||||| |||||| ||||||||||| ||||| ||| |    
T  27096582 gaagaaagcaaaatcacatgtgacatgacacgaaatcgaatgtgatggttccataaaaatgaa-ggattcgaaggtaccggtgtacaatcattctaggtt 27096680  T
Q  118 gaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattga 198  Q
    ||||||||||| ||||||||| || ||| |  || ||| ||||||||||| |||||  ||||||||||||||| |||||||    
T  27096681 gaggaggagcgggaggacatgctattttggctctcaaccaaaagcaggtgccccagaaactgtcgaggacaacccaattga 27096761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 20374869 - 20375070
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttccatnnnnnnnnnnggatttgaaggtgccggtgtacaaccattccaggct 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| | |          |||||||||||||||||||||||| ||||||| | |    
T  20374869 gaagaaagcaaaatcccctgtgacatggcacataatcgaatgtgatggtttcgt-aaaaaagaaggatttgaaggtgccggtgtacaatcattccaagtt 20374967  T
Q  118 gaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattgagataagcgacgagggagat 217  Q
    ||||||||||| ||||||||| || ||| ||| | ||| ||||||| || ||||| |||||| || || |||| | |||||  || | ||||||| ||||    
T  20374968 gaggaggagcgggaggacatgctattttggtcatcaaccaaaagcaagt-gcccaaggactgccgcgggcaacccgattgacttatgtgacgaggaagat 20375066  T
Q  218 gatt 221  Q
    ||||    
T  20375067 gatt 20375070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 49274681 - 49274565
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | ||||||||||| |||||||||||||    
T  49274681 ggattcgaaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgtcccagggactgtc 49274582  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  49274581 gaggacaacccaattga 49274565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 11377936 - 11378052
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | ||||||||||| || ||||||||||    
T  11377936 ggattcgaaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccctagggactgtc 11378035  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  11378036 gaggacaacccaattga 11378052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 44928721 - 44928606
Alignment:
Q  83 gatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcg 182  Q
    |||||||||||||  ||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | ||||||||||  ||||||||||||||    
T  44928721 gatttgaaggtgctagtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggttccccagggactgtcg 44928622  T
Q  183 aggacaacacaattga 198  Q
    |||||||| |||||||    
T  44928621 aggacaacccaattga 44928606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 10052312 - 10052427
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || | ||||||||| | ||||||||||| |||| ||| ||||    
T  10052312 ggattcgaaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgcta-tattgtccttagccaaaagcaggtgccccatggattgtc 10052410  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  10052411 gaggacaacccaattga 10052427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 14632729 - 14632613
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | ||||||||||| || ||||||||||    
T  14632729 ggattcgaaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccctagggactgtc 14632630  T
Q  182 gaggacaacacaattga 198  Q
    |||||| || |||||||    
T  14632629 gaggacgacccaattga 14632613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 34471016 - 34471132
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | ||||||||||| || ||||||||||    
T  34471016 ggattcgaaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccctagggactgtc 34471115  T
Q  182 gaggacaacacaattga 198  Q
    ||||| ||| |||||||    
T  34471116 gaggaaaacccaattga 34471132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 50458205 - 50458321
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| ||| |||| |||||| || ||||| ||| |||||| ||||| ||||||||| || ||| ||||| | | ||||||||||| |||||||||||||    
T  50458205 ggattcgaaagtgctggtgtataatcattcgaggttgaggaagagcgggaggacatgctattttggtcctcagccaaaagcaggtgccccagggactgtc 50458304  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  50458305 gaggacaacccaattga 50458321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 51012247 - 51012357
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggac 187  Q
    |||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | ||||||||||| |||||| |||||| |||||    
T  51012247 gaaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccccaggaactgtcaaggac 51012346  T
Q  188 aacacaattga 198  Q
    ||| |||||||    
T  51012347 aacccaattga 51012357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 13894866 - 13894954
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccaggga 176  Q
    |||||||||||||||||| ||||| ||| |||||||||||| ||||||||| || ||| ||||| ||||||||  ||||| ||||||||    
T  13894866 gaaggtgccggtgtacaatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcaacaaaaacaaggtgccccaggga 13894954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 7247300 - 7247212
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccaggga 176  Q
    ||||||| |||||||||| || |||||| |||||||||||||||||||||| || ||| ||||| ||| ||||  ||||| ||||||||    
T  7247300 gaaggtgtcggtgtacaatcagtccaggttgaggaggagcgagaggacatgctattttggtcctcaaccaaaacaaggtgccccaggga 7247212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 41579169 - 41579076
Alignment:
Q  85 tttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggact 178  Q
    ||||||||||||||||||||| || |||||| |||||||||||| || |||||| || ||| ||||| ||| ||||  ||||| ||||| ||||    
T  41579169 tttgaaggtgccggtgtacaatcagtccaggttgaggaggagcgggaagacatgctattttggtcctcaaccaaaacaaggtgccccagtgact 41579076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 34646182 - 34646274
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || || ||| |||||||||| | ||||||||| || ||| ||||| ||| ||||| ||||| || |||||||||    
T  34646182 gaaggtgccggtgtacaatcaatcgaggttgaggaggagtgggaggacatgctattttggtcctcaaccaaaagaaggtgccctagggactgt 34646274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 45099430 - 45099522
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || || ||| |||||| ||||| |||||||||||| ||| ||||| ||| ||||  |||||  |||||||||||    
T  45099430 gaaggtgccggtgtacaatcagtcgaggttgaggatgagcgggaggacatgttattttggtcctcaaccaaaacaaggtgcaccagggactgt 45099522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 46345566 - 46345658
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || |||||| ||||||| |||| ||||||||| || ||  ||||| ||||||||  ||||| |||| |||||||    
T  46345566 gaaggtgccggtgtacaatcagtccaggttgaggagcagcgggaggacatgctatttcggtcctcaacaaaaacaaggtgccccatggactgt 46345658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 34050867 - 34050814
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgtta 141  Q
    |||||||||||||||||| || || ||| |||||||||||| ||||||||||||    
T  34050867 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatgtta 34050814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 55268041 - 55268130
Alignment:
Q  89 aaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggact 178  Q
    ||||||||||||||||| || || ||| |||||||||||| ||||||||| || ||  ||||| ||| ||||  ||||| ||||||||||    
T  55268041 aaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatgctatttcggtcctgaaccaaaacaaggtgccccagggact 55268130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 34692263 - 34692335
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaa 160  Q
    |||||||||||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||    
T  34692263 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatgctactttggtcctcaaccaaaa 34692335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 51694515 - 51694607
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || || ||| |||||||||||| ||||||||| || |||  |||| ||| ||||  ||||| | ||||||||||    
T  51694515 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatgctattttgttcctaaaccaaaacaaggtgtcgcagggactgt 51694607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 55205906 - 55205994
Alignment:
Q  92 gtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||| ||||||| ||||| ||| |||||||||||| ||||||||| || ||  ||||| ||| ||||  ||||| ||||||||||||    
T  55205906 gtgccgatgtacaatcattcgaggttgaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtgccccagggactgt 55205994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 49611394 - 49611303
Alignment:
Q  89 aaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||| ||||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| | ||||||||||    
T  49611394 aaggtaccggtgtacaatcactcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccgcagggactgt 49611303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 2429725 - 2429635
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggact 178  Q
    |||||||||||||||||| || || ||| |||| ||||||| || |||||| || ||| ||||| ||| ||||  ||||| ||||||||||    
T  2429725 gaaggtgccggtgtacaatcactcgaggttgagcaggagcgggaagacatgctattttggtcctcaaccaaaacaaggtgccccagggact 2429635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 17371862 - 17371772
Alignment:
Q  134 acatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattgagataagcgacgagggagatgattaaa 224  Q
    |||||||| ||| ||||  ||| ||||| |||||  | ||| ||||||||||||||| |||||||  |||| || ||||||||||||||||    
T  17371862 acatgttattttggtccacaaccaaaagtaggtgctctaggaactgtcgaggacaacccaattgacttaagtgatgagggagatgattaaa 17371772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 18441699 - 18441649
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttc 68  Q
    |||||||| |||||| ||| ||||||| ||| |||||||||||||||||||    
T  18441699 gaagaaagaaaaatcgcctatgacatgacacgaaatcgaatgtgatggttc 18441649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 19486773 - 19486723
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttc 68  Q
    |||||||| |||||| ||| ||||||| ||| |||||||||||||||||||    
T  19486773 gaagaaagaaaaatcgcctatgacatgacacgaaatcgaatgtgatggttc 19486723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 36136154 - 36136104
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  36136154 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 36136104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 49139133 - 49139183
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  49139133 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 49139183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 52568400 - 52568510
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggac 187  Q
    |||||||||||||||||| || || ||| |||||||||||| ||| ||||| || |||  || | ||| ||||  ||||| |||||||||||| | || |    
T  52568400 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggagcacatgctattttgatcatcaaccaaaacaaggtgccccagggactgtagtgggc 52568499  T
Q  188 aacacaattga 198  Q
    ||||| |||||    
T  52568500 aacacgattga 52568510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 54391582 - 54391532
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  54391582 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 54391532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 49217708 - 49217800
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||| ||||||||| || || ||| |||||||||||| || |||||| || ||| ||||| ||| ||||  ||||| | ||||||||||    
T  49217708 gaaggtgcgggtgtacaatcactcgaggttgaggaggagcgggaagacatgctattttggtcctcaaccaaaacaaggtgccgcagggactgt 49217800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 51016550 - 51016434
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||  |||||| || ||||| ||| ||||||| | |   |||||||| || ||| ||||| | | ||||||||||| |||| ||||||||    
T  51016550 ggattcgaaggtgatggtgtataatcattcgaggttgaggagaaacagaaggacatgctattttggtcctcagccaaaagcaggtgccccatggactgtc 51016451  T
Q  182 gaggacaacacaattga 198  Q
    || |||||| |||||||    
T  51016450 gaagacaacccaattga 51016434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 6978080 - 6977970
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggac 187  Q
    |||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||||||||| || ||||||||||||||||    
T  6978080 gaaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaagcaggtgcccaagggactgtcgaggac 6977981  T
Q  188 aacacaattga 198  Q
    ||| |||||||    
T  6977980 aacccaattga 6977970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 28272590 - 28272726
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggac 187  Q
    ||||||| |||||||||| ||||||||||| |||||||| |  ||||| ||||| ||| ||||| ||| ||||||||||| || | |||||||||| |||    
T  28272590 gaaggtgtcggtgtacaatcattccaggctaaggaggagtggaaggacttgttattttggtcctcaactaaaagcaggtgccctaaggactgtcgatgac 28272689  T
Q  188 aacacaattgagataagcgacgagggagatgattaaat 225  Q
    ||| | |||||  |||||||||| ||||||||||||||    
T  28272690 aac-ccattgacttaagcgacgaaggagatgattaaat 28272726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 15890865 - 15891042
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttccatnnnnnnnnnnggatttgaaggtgccggtgtacaaccattccaggct 117  Q
    |||||||||||||||  || |||||||| ||  ||||||||||||||||||| |          ||||| |||||||  ||||||||| ||||  ||| |    
T  15890865 gaagaaagcaaaatcgtctatgacatggtacggaatcgaatgtgatggttccgtaaaaaaaa--ggattcgaaggtgttggtgtacaatcattttaggtt 15890962  T
Q  118 gaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattga 198  Q
    |||||||||||  |||||||| || ||| ||||| ||| ||||||||||| ||||||||||||||| |||||| |||||||    
T  15890963 gaggaggagcggaaggacatgctattttggtcctcaaccaaaagcaggtgccccagggactgtcga-gacaacccaattga 15891042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 17537868 - 17537980
Alignment:
Q  86 ttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgagg 185  Q
    |||||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | |||| |||||| ||||  |||||||||||    
T  17537868 ttgaaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaaacaggtgtcccatagactgtcgagg 17537967  T
Q  186 acaacacaattga 198  Q
    ||||| |||||||    
T  17537968 acaacccaattga 17537980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 37311596 - 37311704
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    |||||||||||||| |||||| || ||||| ||| ||| |||||||| ||||||||| || |||  |||| | | ||||| ||||| |||||||||||||    
T  37311596 ggatttgaaggtgctggtgtataatcattcgaggttgatgaggagcgggaggacatgctattttgatcctcagccaaaagtaggtgccccagggactgtc 37311695  T
Q  182 gaggacaac 190  Q
    |||||||||    
T  37311696 gaggacaac 37311704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 16583053 - 16582951
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggac 187  Q
    |||||||||||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||||||||  ||||| || ||||||||| |||| |    
T  16583053 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatgctattttggtcctcaacaaaaacaaggtgccctagggactgtagagggc 16582954  T
Q  188 aac 190  Q
    |||    
T  16582953 aac 16582951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 20989502 - 20989369
Alignment:
Q  92 gtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaaca 191  Q
    |||| |||||| || || || ||| |||| |||||||  ||||| ||||| ||||||||| ||||||||||| ||| |||| | | |||||||||||||     
T  20989502 gtgctggtgtataatcagtctaggttgagaaggagcggaaggacttgttatttttgtcctcaacaaaaagcaagtgccccacgaattgtcgaggacaacc 20989403  T
Q  192 caattgagataagcgacgagggagatgattaaat 225  Q
    ||  |||  |||| ||||||||||||||||||||    
T  20989402 cagctgacttaagtgacgagggagatgattaaat 20989369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 190
Target Start/End: Complemental strand, 33404998 - 33404897
Alignment:
Q  89 aaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggaca 188  Q
    ||||||| ||||||||| || || ||| ||||||||||||  |||||||| || ||| ||||| ||| ||||| ||||| ||||||||||||||||| ||    
T  33404998 aaggtgctggtgtacaatcagtcgaggttgaggaggagcggtaggacatgctattttggtcctcaaccaaaagtaggtgccccagggactgtcgagggca 33404899  T
Q  189 ac 190  Q
    ||    
T  33404898 ac 33404897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 41498079 - 41498171
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || |||||| |||||||||||| ||||||||| || ||  ||||| ||| ||||  ||||| ||||||||||||    
T  41498079 gaaggtgccggtgtacaatcagtccaggttgaggaggagcgggaggacatgctatttcggtcctcaaccaaaacaaggtgccccagggactgt 41498171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 40676373 - 40676471
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||| |||||||||||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||||||  ||||  ||||| |||| |||||||    
T  40676373 ggattcgaaggtgccggtgtacaatcagtcaaggttgaggaggagcgggaggacatgctattttcgtccttaatcaaaacaaggtgccccatggactgt 40676471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 16413166 - 16413336
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttccatnnnnnnnnnnggatttgaaggtgccggtgtacaaccattccaggct 117  Q
    |||||||| |||||| ||| ||||||| |||  ||||||||||||||||||| |          ||||| ||||||| | |||||||| ||||| ||| |    
T  16413166 gaagaaagaaaaatcgcctatgacatgacacggaatcgaatgtgatggttccgtaaaaaagaa-ggattcgaaggtgtcagtgtacaatcattcgaggtt 16413264  T
Q  118 gaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaac 190  Q
    ||||||||||| || ||||||||| |||||  || ||| |||||||||||   ||||||||| ||||||||||    
T  16413265 gaggaggagcgggaagacatgtta-ttttggtctcaaccaaaagcaggtgctgcagggactggcgaggacaac 16413336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 24107739 - 24107840
Alignment:
Q  97 ggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaatt 196  Q
    |||||| || ||||| ||| |||||||||||||||||| ||| || ||| ||||| | | ||||||||||| || | ||||||| ||||||||| |||||    
T  24107739 ggtgtataatcattcgaggttgaggaggagcgagaggaaatgctattttggtcctcagccaaaagcaggtgtcctatggactgttgaggacaacccaatt 24107838  T
Q  197 ga 198  Q
    ||    
T  24107839 ga 24107840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 5421392 - 5421276
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||| |||| | || ||||  ||| ||||||||||||  || ||||| || ||| ||||| | | ||||||||||| |||||||||| ||    
T  5421392 ggattcgaaggtgctggtgcataatcatttgaggttgaggaggagcggcagaacatgctattttggtcctcagccaaaagcaggtgccccagggactctc 5421293  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  5421292 gaggacaacccaattga 5421276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 34520671 - 34520787
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||| |||||||  |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||| | | | ||||||||||| || |||||| |||    
T  34520671 ggattcgaaggtgttggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcttcagccaaaagcaggtgcccgagggaccgtc 34520770  T
Q  182 gaggacaacacaattga 198  Q
    ||||||| | |||||||    
T  34520771 gaggacatcccaattga 34520787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 35492775 - 35492683
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||||||||||||||||  | || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| ||||||||||||    
T  35492775 gaaggtgccggtgtacaattactcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgt 35492683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 28745137 - 28745188
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttcc 69  Q
    |||||||||||||||  ||||||||||||||| |||| ||||||||||||||    
T  28745137 gaagaaagcaaaatcgactgtgacatggcacataatcaaatgtgatggttcc 28745188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 18333606 - 18333557
Alignment:
Q  176 actgtcgaggacaacacaattgagataagcgacgagggagatgattaaat 225  Q
    ||||| ||||||||| |||||||  |||||||||||||||||||||||||    
T  18333606 actgttgaggacaacccaattgacttaagcgacgagggagatgattaaat 18333557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 2918325 - 2918417
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || || ||| |||||||||||  ||||||||| || ||| ||||| ||| ||||  ||||| |||| |||||||    
T  2918325 gaaggtgccggtgtacaatcagtcgaggttgaggaggagcaggaggacatgctattttggtcctcaaccaaaacaaggtgccccatggactgt 2918417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 19470590 - 19470674
Alignment:
Q  96 cggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||| || |||||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| || |||||||||    
T  19470590 cggtgtacaatcagtccaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccctagggactgt 19470674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 43492703 - 43492611
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || |||||| ||| |||||| | ||||||||| || ||| ||||| ||| ||||  ||||| ||||| ||||||    
T  43492703 gaaggtgccggtgtacaatcagtccaggttgacgaggagtgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagtgactgt 43492611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 20989578 - 20989527
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttcc 69  Q
    |||||||||||||||  |||||||||| |||| |||| ||||||||||||||    
T  20989578 gaagaaagcaaaatcgactgtgacatgacacataatcaaatgtgatggttcc 20989527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 3936382 - 3936432
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  3936382 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 3936432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 14913127 - 14913077
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttc 68  Q
    |||||||||||||||  |||||||||| |||||||| |||| |||||||||    
T  14913127 gaagaaagcaaaatcaactgtgacatgacacaaaattgaatctgatggttc 14913077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 17425919 - 17425869
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  17425919 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 17425869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 43983855 - 43983805
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  43983855 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 43983805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 26487709 - 26487594
Alignment:
Q  83 gatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcg 182  Q
    |||| |||||||| |||||| || ||||| ||| |||||||||||| ||||||||| || ||| ||||| | | ||||||||||| |||||||||||||     
T  26487709 gattcgaaggtgctggtgtataatcattcgaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccccagggactgtca 26487610  T
Q  183 aggacaacacaattga 198  Q
    | |||||| |||||||    
T  26487609 atgacaacccaattga 26487594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 38032861 - 38032976
Alignment:
Q  83 gatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcg 182  Q
    |||| |||||||| |||||| || ||||| ||| | |||||||||| ||||||||| || ||| ||||| | | ||||||||||| ||| ||||||||||    
T  38032861 gattcgaaggtgctggtgtataatcattcgaggttaaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgtcccggggactgtcg 38032960  T
Q  183 aggacaacacaattga 198  Q
    |||||||| |||||||    
T  38032961 aggacaacccaattga 38032976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 42167900 - 42168008
Alignment:
Q  90 aggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaa 189  Q
    |||||| |||||| || | ||| ||| |||||||||||| ||||||||| || ||| ||||| | | ||||||||||| ||| |||||||||||||||||    
T  42167900 aggtgctggtgtataatcgttcaaggttgaggaggagcgggaggacatgctattttggtcctcagccaaaagcaggtgccccggggactgtcgaggacaa 42167999  T
Q  190 cacaattga 198  Q
    | |||||||    
T  42168000 cccaattga 42168008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 10205740 - 10205592
Alignment:
Q  18 gaagaaagcaaaatcccctgtgacatggcacaaaatcgaatgtgatggttccatnnnnnnnnnnggatttgaaggtgccggtgtacaaccattccaggct 117  Q
    |||||||||||||||  || |||||||||||||||||||||||||||||||| |            ||| |||||||||||||||||| ||||| ||||     
T  10205740 gaagaaagcaaaatcgactctgacatggcacaaaatcgaatgtgatggttccgtaaaaaaaagc-aattcgaaggtgccggtgtacaatcattctaggcc 10205642  T
Q  118 gaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtg 167  Q
    |||||||||||  ||||| ||||| ||| ||||| | | |||||||||||    
T  10205641 gaggaggagcggaaggacttgttattttggtcctgacccaaaagcaggtg 10205592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 41855959 - 41856051
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || || ||| |||||||||||| ||||||||| || ||| || |||||| ||||  ||||| ||||||||||||    
T  41855959 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatgctattttggttcttaaccaaaacaaggtgccccagggactgt 41856051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 18439257 - 18439349
Alignment:
Q  85 tttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggac 177  Q
    ||||||||||||| ||||||| || |||||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| || ||||||    
T  18439257 tttgaaggtgccgatgtacaatcaatccaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccctagggac 18439349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 28168041 - 28167949
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||||| |||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| ||||||||||||    
T  28168041 gaaggtgtcggtgtacaatcagtcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccccagggactgt 28167949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 19241638 - 19241721
Alignment:
Q  107 cattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaac 190  Q
    ||||| ||| |||||||||||| ||||||||  || ||||||||| | | |||||||| || ||||||||||||| ||||||||    
T  19241638 cattcaagggtgaggaggagcgggaggacatactatttttgtcctcacccaaaagcagttgccccagggactgtcaaggacaac 19241721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 19314822 - 19314905
Alignment:
Q  107 cattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaac 190  Q
    ||||| ||| |||||||||||| ||||||||  || ||||||||| | | |||||||| || ||||||||||||| ||||||||    
T  19314822 cattcaagggtgaggaggagcgggaggacatactatttttgtcctcacccaaaagcagttgccccagggactgtcaaggacaac 19314905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 484335 - 484436
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggac 187  Q
    |||||||||||||||||| || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||  | |||||||||| | ||||    
T  484335 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtaccgcagggactgtagcggac 484434  T
Q  188 aa 189  Q
    ||    
T  484435 aa 484436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 41276313 - 41276221
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||||||||||||| || || || ||| |||||||||||| ||||||||| || ||| ||||| ||| ||||  ||||| | ||||||||||    
T  41276313 gaaggtgccggtgtataatcactcgaggttgaggaggagcgggaggacatgctattttggtcctcaaccaaaacaaggtgccgcagggactgt 41276221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 31171045 - 31171159
Alignment:
Q  83 gatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcg 182  Q
    |||||||| ||||||||||||||||| | ||| ||||||||||||  ||  |||||||| ||  ||||| | ||||||| ||||  || | |||||||||    
T  31171045 gatttgaaagtgccggtgtacaaccagttcagactgaggaggagcaggaatacatgttatttcggtcctcagcaaaaagtaggt-ccctatggactgtcg 31171143  T
Q  183 aggacaacacaattga 198  Q
    || ||||| |||||||    
T  31171144 agaacaactcaattga 31171159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 42604689 - 42604639
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatg 138  Q
    |||||||||||||||||| || || ||| |||||||||||| |||||||||    
T  42604689 gaaggtgccggtgtacaatcactcgaggttgaggaggagcgggaggacatg 42604639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 38872394 - 38872354
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcg 128  Q
    |||||||||||||||||| || |||||| ||||||||||||    
T  38872394 gaaggtgccggtgtacaatcaatccaggttgaggaggagcg 38872354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 1590 - 1474
Alignment:
Q  82 ggatttgaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtc 181  Q
    ||||||||||||||||||||| || || || ||| |||||||||||| | | ||||| || || | |||| ||| ||||| ||||| | |||||||||||    
T  1590 ggatttgaaggtgccggtgtataatcaatcgaggttgaggaggagcgggtgaacatgctatttctatcctcaaccaaaagaaggtgcctcagggactgtc 1491  T
Q  182 gaggacaacacaattga 198  Q
    ||||||||| |||||||    
T  1490 gaggacaacccaattga 1474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 4520 - 4612
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    |||||||||||||||||| || |||||| ||||||| |||| ||||||||| || ||  ||||| ||||||||  ||||| |||| |||||||    
T  4520 gaaggtgccggtgtacaatcagtccaggttgaggagcagcgggaggacatgctatttcggtcctcaacaaaaacaaggtgccccatggactgt 4612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0589 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 5538 - 5438
Alignment:
Q  98 gtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattg 197  Q
    ||||| || ||||| ||| | |||||||| | ||||||||| || ||| ||||| | | |||| |||||| |||||||||||||||||||||| ||||||    
T  5538 gtgtataatcattcgaggttaaggaggagtgggaggacatgctattttggtcctcagccaaaaccaggtgccccagggactgtcgaggacaacccaattg 5439  T
Q  198 a 198  Q
    |    
T  5438 a 5438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 9707 - 9601
Alignment:
Q  119 aggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggacaacacaattgagataagcgacgagggagatg 218  Q
    ||||||||||  ||||||||||| ||| ||||| ||| |||| || ||| || ||||||| ||||||||||| |||||||  || | || |||| |||||    
T  9707 aggaggagcggaaggacatgttattttggtcctcaaccaaaatcatgtgccctagggactatcgaggacaacccaattgacttatgtgaagaggaagatg 9608  T
Q  219 attaaat 225  Q
    |||||||    
T  9607 attaaat 9601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 5803 - 5904
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgtcgaggac 187  Q
    ||||||||| |||||||| || || ||| |||||||||||| ||||||||| || ||  ||||| ||| ||||| ||||  | |||||||||| | ||||    
T  5803 gaaggtgccagtgtacaatcactcgaggttgaggaggagcgggaggacatgctatttaggtcctcaaccaaaagaaggtaccgcagggactgtagcggac 5902  T
Q  188 aa 189  Q
    ||    
T  5903 aa 5904  T

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Target: scaffold0176 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 3024 - 2932
Alignment:
Q  88 gaaggtgccggtgtacaaccattccaggctgaggaggagcgagaggacatgttagttttgtccttaacaaaaagcaggtggcccagggactgt 180  Q
    ||||||||||| |||||| || || ||| |||||||||||| || |||||| || ||| ||||| ||| ||||  ||||| | ||||||||||    
T  3024 gaaggtgccggagtacaatcactcgaggttgaggaggagcgggatgacatgctattttggtcctcaaccaaaacaaggtgccacagggactgt 2932  T

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