View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_85 (Length: 348)
Name: NF1773_high_85
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_85 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 192429 - 192758
Alignment:
| Q |
1 |
tacatagctagcttgtccaacaattccattcaaagagaaccttaattatctaatatacgtagctctgcttnnnnnnnnnnnntatatagcattattatga |
100 |
Q |
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| T |
192429 |
tacatagctagcttgtccaacaattccattcaaagagaaccttaattatctaatatacatagctctgcttaaaaaacaaaaatatatagcattattatga |
192528 |
T |
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| Q |
101 |
aacataatggattaacaattgtcacttctttttaatcaatcaacattgcctttcacatatcaaaagaaaaactagaaaagcatacataaataagaattaa |
200 |
Q |
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| T |
192529 |
aacataatggattaacaattgtcacttctttttaatcaatcaacattgcctttcacatatcaaaagaaaaactagaaaagcatacataaataagaattaa |
192628 |
T |
|
| Q |
201 |
ttaatatcatctacaaacttgagcatgatgagtgggagtaacatcacaattctctccaccaaatccaaactcatgcaagtttaaggcttcttttttatct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
192629 |
ttaatatcatctacaaacttgagcatgatgagtgggagtaacatcacaattctctccaccaaatccaaactcatgcaagtttaaggcttcttttttatct |
192728 |
T |
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| Q |
301 |
tccacaaccttcaatattttctcaaacatt |
330 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
192729 |
tccacaaccttcaatattttctcaaacatt |
192758 |
T |
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