View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_high_9 (Length: 691)

Name: NF1773_high_9
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_high_9
NF1773_high_9
[»] chr8 (1 HSPs)
chr8 (16-673)||(31241991-31242649)
[»] scaffold0094 (7 HSPs)
scaffold0094 (293-673)||(10781-11174)
scaffold0094 (556-673)||(8785-8908)
scaffold0094 (293-472)||(8913-9099)
scaffold0094 (160-248)||(10694-10782)
scaffold0094 (9-134)||(10531-10652)
scaffold0094 (9-135)||(9227-9349)
scaffold0094 (160-248)||(9098-9186)
[»] chr7 (7 HSPs)
chr7 (293-663)||(17216101-17216483)
chr7 (402-673)||(17214081-17214358)
chr7 (160-248)||(17216014-17216102)
chr7 (9-135)||(17214528-17214650)
chr7 (160-248)||(17214399-17214487)
chr7 (9-135)||(17215851-17215973)
chr7 (293-326)||(17214367-17214400)


Alignment Details
Target: chr8 (Bit Score: 619; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 16 - 673
Target Start/End: Complemental strand, 31242649 - 31241991
Alignment:
Q  16 atggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgtaggaggat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31242649 atggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcacaacctgagacattgcaggtacgtaggaggat 31242550  T
Q  116 ttaaatgaatgttctatctctgcttacattaataagtatggttgattaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31242549 ttaaatgaatgttctatctctgcttacattaataagtatggttgattaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctg 31242450  T
Q  216 atgtttgtatgtaatttctttgagataaattatagtagttatgattatgaaaaataattaacaagcatgccatacagatctaactaaacaaggacatcat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31242449 atgtttgtatgtaatttctttgagataaattatagtagttatgattatgaaaaataattaacaagcatgccatacagatctaactaaacaaggacatcat 31242350  T
Q  316 agcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatg-nnnnnnnnggtatttcaattaatattc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||         |||||||||||||||||||    
T  31242349 agcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgcctaagatatgtttttttttggtatttcaattaatattc 31242250  T
Q  415 tcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaatacagtgagtaatta 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31242249 tcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaatacagtgagtaatta 31242150  T
Q  515 tgcaatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaattatctcgtgttcttaatcttagaatgcat 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31242149 tgcaatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaattatctcgtgttcttaatcttagaatgcat 31242050  T
Q  615 ctttgttctcgatcatagtgtctaacacacccattgcaactaatcttacgccttgatgc 673  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31242049 ctttgttctcgatcatagtgtctaacacacccattgcaactaatcttacgccttgatgc 31241991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 293 - 673
Target Start/End: Original strand, 10781 - 11174
Alignment:
Q  293 atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatgnnnnn 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||| |||  ||| |         
T  10781 atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatatattctgataaagaaaagctatattgcatgcctataataagttatt 10880  T
Q  393 nnnggtatttc---------aattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatctt 483  Q
       || |||||         ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  10881 t--ggaatttctatgttatcaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcccaacaagatcttctacctcatctt 10978  T
Q  484 aatcagcaggaatcaatacagtgagtaattatgcaatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaacttta 583  Q
    ||||||||  ||||||   ||| ||||||||||||||  | ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  10979 aatcagcaaaaatcaacgtagtaagtaattatgcaattatattctttctattctcccttgacattaacttttccaatccttgatagaatcgtgaacttta 11078  T
Q  584 attatctcgtgttcttaatctt------agaatgcatctttgttctcgatcatagtgtctaacacacccattgcaactaatcttacgccttgatgc 673  Q
    ||| ||||||||||||||||||      ||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||  ||||||||    
T  11079 attctctcgtgttcttaatctttacttaagaatgcatctttgttctcaatcatagtgtctaacacgcccattgcaagtaatcttacatcttgatgc 11174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 556 - 673
Target Start/End: Complemental strand, 8908 - 8785
Alignment:
Q  556 ccaatccttgatagaatcatgaactttaattatctcgtgttcttaatctta------gaatgcatctttgttctcgatcatagtgtctaacacacccatt 649  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||||    
T  8908 ccaatccttgatagaatcgtgaactttaattatcttgtgttcttaatctttacttaggaatgcatctttgttctcgatcatagtgtctaacacgcccatt 8809  T
Q  650 gcaactaatcttacgccttgatgc 673  Q
    ||||||||||||||  ||||||||    
T  8808 gcaactaatcttacatcttgatgc 8785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 293 - 472
Target Start/End: Complemental strand, 9099 - 8913
Alignment:
Q  293 atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatgnnnnn 392  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||| ||||||||||||  | ||||||||| |||  ||| |         
T  9099 atctaactaaacaagcatatcatagcagaaattttgattgtttaaaatatgatatattgtgataaagaaaagctatattgcatgcctataataagttatt 9000  T
Q  393 nnnggtatttc---------aattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttc 472  Q
        | |||||         ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  8999 ta--gaatttctatgttgttaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcccaacaagatcttc 8913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 10694 - 10782
Alignment:
Q  160 attaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgtatgtaatttctttgagataaattat 248  Q
    |||||||||| ||| |||||||||||| ||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  10694 attaataagtatgtggcatgatgctcagaatattaggtttttaaatgttgttgctgatgtttgtatgtaatttctttgagataaattat 10782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 10531 - 10652
Alignment:
Q  9 gaagaatatggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgta 108  Q
    |||||| ||||  ||||||||||||||||||| |||||||||||||||||| |||  ||||||| | ||| |||| ||||| ||| |||||| ||||       
T  10531 gaagaaaatggcaaggctgatttaagttttcttagagaagagattcaaaattcaggattcctttgtttgtcttcacaaccttagatattgcaagtac--- 10627  T
Q  109 ggaggatttaaatgaatgttctatct 134  Q
      ||||||||||||||||||||||||    
T  10628 -aaggatttaaatgaatgttctatct 10652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 9349 - 9227
Alignment:
Q  9 gaagaatatggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgta 108  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||||||||| ||  ||||||| | | | |||| | ||| |||||||||||||||       
T  9349 gaagaaaatggcaaggctgatttaagttttctcagagaagagattcaaaatctaggattcctttgtttcttttcacagcctaagacattgcaggtac--- 9253  T
Q  109 ggaggatttaaatgaatgttctatctc 135  Q
      || |||||||| |||||||||||||    
T  9252 -aagtatttaaattaatgttctatctc 9227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 9186 - 9098
Alignment:
Q  160 attaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgtatgtaatttctttgagataaattat 248  Q
    |||||||||| ||| |||||||||||| ||||||| ||||| |||||||| |  | |||||||||||| |||||||||| |||||||||    
T  9186 attaataagtatgtggcatgatgctcacaatatcaggtttttaaatgttgttcatcatgtttgtatgttatttctttgatataaattat 9098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 293 - 663
Target Start/End: Original strand, 17216101 - 17216483
Alignment:
Q  293 atctaactaaacaaggacatcatagcagaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatgnnnnn 392  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||  | ||||| ||||||| |||| |         
T  17216101 atctaactaaacaaggacatcgtagcagaaattttgattgttcaaaacatgatatattctgataaagaaaagctatattgtatgtctatgataagttatt 17216200  T
Q  393 nnnggtattt-------caattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaa 485  Q
         | |||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| |||| ||||||    
T  17216201 tggaatttttatgttgtcaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcc--acaagatcttctacctcgtcttaa 17216298  T
Q  486 tcagcaggaatcaatacagtgagtaattatgcaatccttttcttt-ccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaa 584  Q
    ||||||  ||||||| |||| ||||||||||||||  | |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  17216299 tcagcaaaaatcaatgcagtaagtaattatgcaattatattcttttccattctcccttggcattaacttttccaatccttgatagaatcgtgaactttag 17216398  T
Q  585 ttatctcgtgttcttaatctt------agaatgcatctttgttctcgatcatagtgtctaacacacccattgcaactaatcttac 663  Q
    |||||||||| ||||||||||      ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17216399 ttatctcgtgctcttaatctttacttaagaatgcatctttgttctcgatcatagtgtctaacacgcccattgcaactaatcttac 17216483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 402 - 673
Target Start/End: Complemental strand, 17214358 - 17214081
Alignment:
Q  402 tcaattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaata 501  Q
    ||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||      
T  17214358 tcaattaatattctcacaactttgtttaattgcacaatgacaacaaccattgtcttcccaacaagatcttctacctcatcttaatcagcaagaatcaacg 17214259  T
Q  502 cagtgagtaattatgcaatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaattatctcgtgttcttaa 601  Q
    |||| ||||||||| ||||  | |||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||    
T  17214258 cagtaagtaattattcaattgtattctttccattctcccttggcattaacttttccaatccttaatagaattgtgaactttaattatctcgtgttcttaa 17214159  T
Q  602 tctt------agaatgcatctttgttctcgatcatagtgtctaacacacccattgcaactaatcttacgccttgatgc 673  Q
    ||||      |||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||  ||||||||    
T  17214158 tctttacttaagaatgcatctttgttctcgataatattgtctaacacgcccattgcaactaatcttacatcttgatgc 17214081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 17216014 - 17216102
Alignment:
Q  160 attaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgtatgtaatttctttgagataaattat 248  Q
    |||||||||| ||| |||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  17216014 attaataagtatgtggcatgatgctcaaaatatcaggtttttaaatgttgctgctgatgtttgtatttaatttctttgagataaattat 17216102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 17214650 - 17214528
Alignment:
Q  9 gaagaatatggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgta 108  Q
    |||||| ||||  ||| |||||||||||| |||||||||||||||||||||||||  ||||||| | ||| |||| ||||||||||||||||||||        
T  17214650 gaagaaaatggcaaggatgatttaagtttactcagagaagagattcaaaatccaggattcctttgtttgtcttcacaacctgagacattgcaggta---- 17214555  T
Q  109 ggaggatttaaatgaatgttctatctc 135  Q
    | | |||||||||||||||||||||||    
T  17214554 gaatgatttaaatgaatgttctatctc 17214528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 17214487 - 17214399
Alignment:
Q  160 attaataagtttgttgcatgatgctcataatatcatgttttgaaatgttgctgctgatgtttgtatgtaatttctttgagataaattat 248  Q
    |||||||||| ||| |||||||||||||||||| | ||||| |||||||||| | |||||||||||||||||||||| |||||||||||    
T  17214487 attaataagtatgtggcatgatgctcataatataaggtttttaaatgttgcttcagatgtttgtatgtaatttctttaagataaattat 17214399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 17215851 - 17215973
Alignment:
Q  9 gaagaatatggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgta 108  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||||||||| ||  ||||||| | | | |||| ||||||||||||| |    | |||    
T  17215851 gaagaaaatggcaaggctgatttaagttttctcagagaagagattcaaaatctaggattcctttatttatcttcacaacctgagacattac----atgta 17215946  T
Q  109 ggaggatttaaatgaatgttctatctc 135  Q
    | |||| ||||||||||||||||||||    
T  17215947 gaaggacttaaatgaatgttctatctc 17215973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 293 - 326
Target Start/End: Complemental strand, 17214400 - 17214367
Alignment:
Q  293 atctaactaaacaaggacatcatagcagaaattt 326  Q
    ||||||||||||||||||||||||||||||||||    
T  17214400 atctaactaaacaaggacatcatagcagaaattt 17214367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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