View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_90 (Length: 344)
Name: NF1773_high_90
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_90 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 4725984 - 4725686
Alignment:
| Q |
1 |
atctaagttacttcttgttagtatctaagttgcgcagattgatatatgatttacatnnnnnnngaaattcatatataattgttgtgtatgtgactcaaaa |
100 |
Q |
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| T |
4725984 |
atctaagttacttcttgttagtatctaagttgcgcagattgatatatgatttacataaaaaaagaaattcatatataattgttgtgtatgtgactcaaaa |
4725885 |
T |
|
| Q |
101 |
tcttgaatatcaaattattaattacttaatctcttctctc--nnnnnnnnnttacttaatcacnnnnnnnaaaaattgtcacgccaagcatctggctaaa |
198 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4725884 |
tcttgaaaatcaaattattaattacttaatctcttctctcaaaaaaaaaaagtacttaatcactttttttaaaaattgtcacgccaagcatctggctaaa |
4725785 |
T |
|
| Q |
199 |
cattagtctactagtatatcataaggtgggaactgggaaatatgaaatgttgcnnnnnnnntctcatcaaataatgttgcaacttaaatttagttccatg |
298 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4725784 |
cattagtctac---tatatcataaggtgggaactgggaaatatgaaatgttgcaaaaaaaatctcatcaaataatgttgcaacttaaatttagttccatg |
4725688 |
T |
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