View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_91 (Length: 344)
Name: NF1773_high_91
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_91 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 152 - 312
Target Start/End: Original strand, 37783737 - 37783893
Alignment:
| Q |
152 |
taaaataagagaagaaattggtacaatatcactgtctcattcaattattctctataggagaacaacatccccacacacactaatacatacagggtgtttg |
251 |
Q |
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| T |
37783737 |
taaaataagagaagaaattggtacaatgtcactgtctcattcaattattctctataagagaacaacacccccacacacact----gatacagggtgtttg |
37783832 |
T |
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| Q |
252 |
gcctatcttattttgggcccctctcatcgttaaagggagaggctatgccacacaatatata |
312 |
Q |
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| T |
37783833 |
gcctatcttattttgggcccctctcatcgttaaagggagaggctatgccaaacaatatata |
37783893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 35133306 - 35133360
Alignment:
| Q |
18 |
gaagtaacacaacataggcatggtaagtggaggcgtgcacagtaaggagctgaat |
72 |
Q |
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| T |
35133306 |
gaagcaacacaacataggtatggtaagtggaggcgtgcacagtaaggagctgaat |
35133360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 40330239 - 40330185
Alignment:
| Q |
18 |
gaagtaacacaacataggcatggtaagtggaggcgtgcacagtaaggagctgaatg |
73 |
Q |
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| T |
40330239 |
gaagtaacacagcataggcatggtaagtggaggcgtgcac-gtaaggagctgaatg |
40330185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 41985514 - 41985460
Alignment:
| Q |
19 |
aagtaacacaacataggcatggtaagtggaggcgtgcacagtaaggagctgaatg |
73 |
Q |
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| T |
41985514 |
aagtaacagagcataggcatggtaagtggaggcgtgcacaataaggagctgaatg |
41985460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 3777136 - 3777191
Alignment:
| Q |
18 |
gaagtaacacaacataggcatggtaagtggaggcgtgcacagtaaggagctgaatg |
73 |
Q |
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| T |
3777136 |
gaagcaacacagcataggcatggtaagtgatggcatgcacagtaaggagctgaatg |
3777191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 37783657 - 37783685
Alignment:
| Q |
70 |
aatgcatgttctatttgacgcggataatc |
98 |
Q |
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| T |
37783657 |
aatgcatgttctatttgacgcggataatc |
37783685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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