View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_high_94 (Length: 341)
Name: NF1773_high_94
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_94 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 33089830 - 33089510
Alignment:
| Q |
1 |
caaacccaattcaacaaacctctccaaaatcacttttttactctttgatgagtaaaccaaatgaaaaattgttgataaacatgcttttgtagaagcactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33089830 |
caaacccaattcaacaaacctctccaaaatcacttttttactctttgatgagtaaaccaaatgaaaaattgttgataaacatgcttttgtagaagcactc |
33089731 |
T |
|
| Q |
101 |
ccaatctcaacattaaccttaaccatgttgaccaaagattcaacaatcccttcaatttttgccaatgactcaacattcatttccttaagcaacaaagaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33089730 |
ccaatctcaacattaaccttaaccatgttgaccaaagattcaacaatcccttcaatttttgccaatgactcaacattcatttccttaagcaacaaagaag |
33089631 |
T |
|
| Q |
201 |
cattttgcctggttgaaattttttgttgatcatttaagaaccaaaccaaacaactcaaagaatttgaagatcccaaaaagacaaatctactctcttcaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33089630 |
cattttgcctggttgaaattttttgttgatcatttaagaaccaaaccaaacaactcaaagaatttgaagatcccaaaaagacaaatctactctcttcaga |
33089531 |
T |
|
| Q |
301 |
aagaggacgcatccatgtcag |
321 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
33089530 |
aagaggacgcatccatgtcag |
33089510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University