View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1773_high_97 (Length: 336)
Name: NF1773_high_97
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_97 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 28675937 - 28675620
Alignment:
| Q |
1 |
aagctatctgcaaaacctatttctagtccaggtagaatggaaaagtttccaccaccattgatgagattcttaaaatcaaatgcagcaaacaaaagcagag |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28675937 |
aagctatctgcaaaacccatttctagtccaggtagaatggaaaagtttccaccaccattgatgagattcttaaaatcaaatgcagcaaacaaaagcagag |
28675838 |
T |
|
| Q |
101 |
gaagaacaagatcaaagtctaactctatgttcttaatcctaaggaaaaagaacactacttccattgaaaccaaagaaccttcttcccctaaagtcacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28675837 |
gaagaacaagatcaaagtctaactctatgttcttaatcctaaggaaaaagaacactacttccattgaaaccaaagaaccttcttcccctaaagtcacttg |
28675738 |
T |
|
| Q |
201 |
catgggtcaagttcgagttaaacgctcctccaaacaacccaccactaaaaagggtcgtccctcctccggtgacggagctccgagtaaatgccgctgccgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28675737 |
catgggtcaagttcgagttaaacgctcctccaaacaacccaccactaaaaagggtcgtccctcctccggtgacggagctccgagtaaatgccgctgccct |
28675638 |
T |
|
| Q |
301 |
ttttggtgggtcccacat |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
28675637 |
ttttggtgggtcccacat |
28675620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 40638109 - 40638148
Alignment:
| Q |
173 |
aagaaccttcttcccctaaagtcacttgcatgggtcaagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40638109 |
aagaaccttcttcccctaaagtcacttgcatgggtcaagt |
40638148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University