View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_high_99 (Length: 331)
Name: NF1773_high_99
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_high_99 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 8165034 - 8165349
Alignment:
| Q |
1 |
tcatcaagttgcacgcataattgttttgccaattttcctctcgcaggtgtcgtattttgatctggtacataagtattcggctaccttcagtttgaatcca |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
8165034 |
tcatcaagttgcacgcatgattgttttgccaattttcctctcgcaggtgtcgtattttgatctggtacataagtattcggctatcttcaatttgaatcca |
8165133 |
T |
|
| Q |
101 |
atccatatacgtaagtgttttgttttgatt------tgcctatctcgtataccttatacgtaagtgttttggttcttttaaatctcaatcccagtgatca |
194 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8165134 |
atccatatacgtaagtgttttgttttgattccaatttgcctatctcgtataccttatacgtaagtgttttggttcttttaaatctcaatcccactgatca |
8165233 |
T |
|
| Q |
195 |
ttagtcctagtatcgttatcttttattcccataaatccatcatcactctttcatgaatcgtaacatgtgttatgtgttgttttttaatggacacacatgg |
294 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8165234 |
ttaatcctagtatcgttatcttttattcccataaatccatcatcactctttcatgaatcgtaacatgtgttatgtgatgttttttaatggacacacatgg |
8165333 |
T |
|
| Q |
295 |
aatatctgcctagcca |
310 |
Q |
| |
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|||||||||||||||| |
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| T |
8165334 |
aatatctgcctagcca |
8165349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 26995981 - 26995885
Alignment:
| Q |
137 |
tctcgtataccttatacgtaagtgttttggttcttttaaatctcaatcccagtgatcattagtcctagtatcgttatcttttattcccataaatcca |
233 |
Q |
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||||||||| |||||||||||||| ||||||||||||||| ||||||| |||||| |||| ||||||||| | | || |||||||||||||||||| |
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| T |
26995981 |
tctcgtataatttatacgtaagtgtcttggttcttttaaatttcaatcctagtgattattaatcctagtattggtttcatttattcccataaatcca |
26995885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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