View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1773_low_10 (Length: 703)

Name: NF1773_low_10
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1773_low_10
NF1773_low_10
[»] chr3 (16 HSPs)
chr3 (228-689)||(24370017-24370480)
chr3 (7-386)||(24358479-24358857)
chr3 (457-689)||(24364063-24364295)
chr3 (16-191)||(24369844-24370020)
chr3 (13-193)||(24364625-24364806)
chr3 (249-386)||(24364404-24364541)
chr3 (245-392)||(24355617-24355759)
chr3 (499-689)||(24346776-24346966)
chr3 (49-164)||(24354862-24354974)
chr3 (245-408)||(24362479-24362642)
chr3 (501-689)||(24362730-24362918)
chr3 (16-96)||(24344557-24344634)
chr3 (457-592)||(24355839-24355976)
chr3 (467-592)||(24359177-24359305)
chr3 (293-386)||(24346558-24346651)
chr3 (13-155)||(24351741-24351880)


Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 228 - 689
Target Start/End: Original strand, 24370017 - 24370480
Alignment:
Q  228 ttcaagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggccaaaggatgtt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  24370017 ttcaagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagactactaaaagaacttcatcaatgaattggccaaaggatgtt 24370116  T
Q  328 agagctcaggaagttgctcaaaatttcatctcatgcaatccttttttcacaattctcatcaagccaattaatctggtagaacatactcgggtaggatgca 427  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24370117 agagctcaggaagttgctcaaaatttcatctcatgcaatccatttttcacaattctcatcaagccaattaatctggtagaacatactcgggtaggatgca 24370216  T
Q  428 caaacacaatttttactacatatattcatttatgctgcgattataaattatgatgattgataatagtat--catactatgcagtctgtaccagatttaaa 525  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  24370217 caaacacaatttttactacatatattcatttatgctgtgattataaattatgatgattgataatagtattatatactatgcagtctgtaccagatttaaa 24370316  T
Q  526 aggggttattgataacaaggacacaaatgtgatgctgctgattgggaaaagatcatggaatgtgaaactacttccttcttatgagggcagaaatggccgt 625  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  24370317 aggggttattgagaacaaggacacaaatgtgatgctgctgattgggaaaagatcatggaatgtgaaactacttcgttcttatgagggcaaaaatggccgt 24370416  T
Q  626 cgcctttccgcgggctggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtg 689  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24370417 cgcctttccgcgggctggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtg 24370480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 24358479 - 24358857
Alignment:
Q  7 tagattattcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  24358479 tagattattcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggacgaatggcttaattggaa 24358578  T
Q  107 gaaggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgaggtt-ggtttggtttcttgattttcttttcagtgtgcatatatat 205  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||  ||    
T  24358579 gaaggctaaacaaagatcacctttcgtttctcctcgaccacataaaaaagttcgaggtttggtttggtttcttgattttcttttcagtgtacatat--at 24358676  T
Q  206 aatacataatggattgatgctcttcaagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatc 305  Q
    |||||||||||||||||||||||||||||||||||||  || |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  24358677 aatacataatggattgatgctcttcaagagtttcttctttgatttacattgcacgcatatatgcaggtgatgatgagaagactactaaaagaacttcatc 24358776  T
Q  306 aatcaattggccaaaggatgttagagctcaggaagttgctcaaaatttcatctcatgcaatccttttttcacaattctcat 386  Q
    ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  24358777 aataaattggccaaaggatgttagagctcagaaagtagctcaaaatttcatctcaaacaatccttttttcacaattctcat 24358857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 457 - 689
Target Start/End: Complemental strand, 24364295 - 24364063
Alignment:
Q  457 ttatgctgcgattataaattatgatgattgataatagtatcatactatgcagtctgtaccagatttaaaaggggttattgataacaaggacacaaatgtg 556  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24364295 ttatgctgtgattataagttatgatgattgataatagtattatactatgcagtctgtaccagatttaaaaggggttattgagaacaaggacacaaatgtg 24364196  T
Q  557 atgctgctgattgggaaaagatcatggaatgtgaaactacttccttcttatgagggcagaaatggccgtcgcctttccgcgggctggtacttatttgcaa 656  Q
    |||||||||||||||||||||||||||||||||||| |||||| || ||||||||| | | ||  |||||||||||| || |||||| |||| |||  ||    
T  24364195 atgctgctgattgggaaaagatcatggaatgtgaaattacttcgttgttatgagggaaaatataaccgtcgcctttctgctggctggcacttgtttttaa 24364096  T
Q  657 gagaaagtggactgaaatcaggagatgtttgtg 689  Q
      |||||||||||||||||||||||||||||||    
T  24364095 ctgaaagtggactgaaatcaggagatgtttgtg 24364063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 24369844 - 24370020
Alignment:
Q  16 cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  24369844 cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggctag 24369943  T
Q  116 acaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttca 191  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  24369944 acaaagatcaccttttgtttcttctcgaccacataagaaagttcaaggtttggtttggtttcttgattttcttttca 24370020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 24364806 - 24364625
Alignment:
Q  13 attcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggc 112  Q
    |||||||| |||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24364806 attcttcaagtgacactaatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggc 24364707  T
Q  113 taaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttcagt 193  Q
    || |||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24364706 tagacaaagatcaccttttatttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattttcttttcagt 24364625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 249 - 386
Target Start/End: Complemental strand, 24364541 - 24364404
Alignment:
Q  249 ttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggccaaaggatgttagagctcaggaagttgctcaa 348  Q
    ||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||| || ||||| ||| ||| ||||||||||||||| ||||||    
T  24364541 ttacattgcacacatatatgcaggagatcatgagaagactactaaaagaacttcatcaataaactggccgaagaatgctagagctcaggaagtagctcaa 24364442  T
Q  349 aatttcatctcatgcaatccttttttcacaattctcat 386  Q
    ||||||||||||||||||||||| || ||| |||||||    
T  24364441 aatttcatctcatgcaatcctttctttacagttctcat 24364404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 245 - 392
Target Start/End: Original strand, 24355617 - 24355759
Alignment:
Q  245 tgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggccaa-aggatgttagagctcaggaagttg 343  Q
    ||||||| ||| |||||||||||||||||||   | |||| ||| |||||||||||||||||     |||||||| |||| | ||||||||||||||| |    
T  24355617 tgttttatattccacacatatatgcaggtgagattaagaaaactgctaaaagaacttcatca-----ttggccaagagga-gctagagctcaggaagtag 24355710  T
Q  344 ctcaaaatttcatctcatgcaatccttttttcacaattctcatcaagcc 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24355711 ctcaaaatttcatctcatgcaatccttttttcacaattctcatcaagcc 24355759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 499 - 689
Target Start/End: Original strand, 24346776 - 24346966
Alignment:
Q  499 tactatgcagtctgtaccagatttaaaaggggttattgataacaaggacacaaatgtgatgctgctgattgggaaaagatcatggaatgtgaaactactt 598  Q
    ||||||||||| |||||||  |||||| ||||||||||| ||||| || |   |||||||||||| |||||||||||||||||||||| ||||| | ||     
T  24346776 tactatgcagtgtgtaccaactttaaatggggttattgagaacaaagaaaagtatgtgatgctgcagattgggaaaagatcatggaatctgaaattgctc 24346875  T
Q  599 ccttcttatgagggcagaaatggccgtcgcctttccgcgggctggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtg 689  Q
    |||| ||  ||||  |||||||  || |||||||| || || |||| ||| ||||| ||||||||||||||| || |||||||||||||||    
T  24346876 ccttattgcgaggctagaaatgttcgccgcctttcggccggttggtccttgtttgctagagaaagtggactgcaagcaggagatgtttgtg 24346966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 24354862 - 24354974
Alignment:
Q  49 ttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccaca 148  Q
    |||||||||||||||||||    || |||||||||||||| ||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||| ||    
T  24354862 ttgatcatagtgatgatgag---tctgttgagattttggaagaatggcttaatcagaagaatgctagacaaagatcacctttcgtttctcctcgacctca 24354958  T
Q  149 taagaaagttcgaggt 164  Q
    |||||||||| |||||    
T  24354959 taagaaagttagaggt 24354974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 245 - 408
Target Start/End: Original strand, 24362479 - 24362642
Alignment:
Q  245 tgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggccaaaggatgttagagctcaggaagttgc 344  Q
    ||||||| |||||||||||||||||||||||   | |||||||| || |||||||| ||||| | |||||||| | ||  | ||||||||  ||||| ||    
T  24362479 tgttttatatttcacacatatatgcaggtgagattaagaagactactgaaagaactacatcattgaattggcctatgggagctagagctcgagaagtagc 24362578  T
Q  345 tcaaaatttcatctcatgcaatccttttttcacaattctcatcaagccaattaatctggtagaa 408  Q
    |  ||| ||||||||| ||||||||||||||||||||||||| ||||| | | |||||||||||    
T  24362579 tgcaaaattcatctcaagcaatccttttttcacaattctcataaagcctaatcatctggtagaa 24362642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 501 - 689
Target Start/End: Original strand, 24362730 - 24362918
Alignment:
Q  501 ctatgcagtctgtaccagatttaaaaggggttattgataacaaggacacaaatgtgatgctgctgattgggaaaagatcatggaatgtgaaactacttcc 600  Q
    ||||||||| ||||||| ||||| ||||||||||||| ||||| || |   ||||| | |||| |||||||||||||||||||||||||||| | || |     
T  24362730 ctatgcagtgtgtaccaaatttagaaggggttattgagaacaaagagaagtatgtggttctgcagattgggaaaagatcatggaatgtgaaattgctccg 24362829  T
Q  601 ttcttatgagggcagaaatggccgtcgcctttccgcgggctggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtg 689  Q
    || ||| ||||  | |||||| || | ||| || || || |||| ||| |||||||| |||||||||||| |||| |||||||||||||    
T  24362830 ttattacgaggctaaaaatggtcgccacctatcagcaggttggtccttgtttgcaagtgaaagtggactgcaatcgggagatgtttgtg 24362918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 24344557 - 24344634
Alignment:
Q  16 cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggc 96  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||   |||||||||||||||| ||||||||||    
T  24344557 cttcatgtgacactgatgatgaaaatgacaatgttggtcatagtgatgatg---aatcagttgagattttagatgaatggc 24344634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 457 - 592
Target Start/End: Original strand, 24355839 - 24355976
Alignment:
Q  457 ttatgctgcgattataaattatgatgattgataatagtatcatac--tatgcagtctgtaccagatttaaaaggggttattgataacaaggacacaaatg 554  Q
    ||||| || ||||||||||||  ||||||||||||| ||| ||||  |||||||  ||||||| |||| |||||||||||||| ||||| || |   |||    
T  24355839 ttatgttgtgattataaattaatatgattgataatactattataccatatgcagaatgtaccaaattttaaaggggttattgagaacaaagagaaggatg 24355938  T
Q  555 tgatgctgctgattgggaaaagatcatggaatgtgaaa 592  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  24355939 tgatgcttcagattgggaaaagatcatggaatgtgaaa 24355976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 467 - 592
Target Start/End: Original strand, 24359177 - 24359305
Alignment:
Q  467 attataaattatgatgattgataatagtatcatactatgcagtctgtacc---agatttaaaaggggttattgataacaaggacacaaatgtgatgctgc 563  Q
    |||||| |||||  |||||||||||||||| || ||||||||| ||||||   ||||||||||||| ||||||| ||||| || |  |||||  | ||||    
T  24359177 attatatattatagtgattgataatagtattatgctatgcagtttgtacctttagatttaaaagggattattgagaacaaagagaagaatgttcttctgc 24359276  T
Q  564 tgattgggaaaagatcatggaatgtgaaa 592  Q
     ||||||||||| ||||||||||||||||    
T  24359277 agattgggaaaaaatcatggaatgtgaaa 24359305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 293 - 386
Target Start/End: Original strand, 24346558 - 24346651
Alignment:
Q  293 aaagaacttcatcaatcaattggccaaaggatgttagagctcaggaagttgctcaaaatttcatctcatgcaatccttttttcacaattctcat 386  Q
    |||||||| |||||   |||||||||||||  | ||||||||||||||| |||  ||| |||||||||  ||||||||||||||||||||||||    
T  24346558 aaagaactacatcatggaattggccaaagggagctagagctcaggaagtagctttaaaattcatctcaaccaatccttttttcacaattctcat 24346651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 24351741 - 24351880
Alignment:
Q  13 attcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggc 112  Q
    ||||||||||||||| ||||||||||||||  ||||||| ||| |   |||| ||| ||||| |||||||||  ||||||||||  |||| |||||  ||    
T  24351741 attcttcatgtgacactgatgatgaaaatggaaatgttggtcaaa---atgacgatgaatcacttgagatttcagatgaatggcgaaatcagaagattgc 24351837  T
Q  113 taaacaaagatcaccttttgtttctcctcgaccacataagaaa 155  Q
    || | ||||  |||| ||  ||| |||||||||||||||||||    
T  24351838 tagaaaaaggccaccattattttatcctcgaccacataagaaa 24351880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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