View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1773_low_101 (Length: 333)
Name: NF1773_low_101
Description: NF1773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1773_low_101 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 25784487 - 25784268
Alignment:
| Q |
14 |
ctaggtgatatttatgatgaaaataaaatgaattgatacagatacaacaatataacatgagagacatttacatacactttaggtggacaacgtgaaagtc |
113 |
Q |
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| T |
25784487 |
ctagatgatatttctgatgaaaataaaatgaattgatacagatacaacaatataacatgagagacgtttacatacacttcaggtggacaaggtgaaagtc |
25784388 |
T |
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| Q |
114 |
tattggctgtgatgtcatgtaaccttcatc----gatacatgatgtattcaaacttttcttgaattgaaactggaccatccggtaggcctaaccaattca |
209 |
Q |
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| T |
25784387 |
cattggctgtgatgtcatgtaaccttcatccatacatacatgatgtattcaaacttttcttgaattgaaactggaccatccggtaggcccaaccaattca |
25784288 |
T |
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| Q |
210 |
gtgttaagaacggttttatt |
229 |
Q |
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|||||||||||||||||||| |
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| T |
25784287 |
gtgttaagaacggttttatt |
25784268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 269 - 324
Target Start/End: Complemental strand, 25784271 - 25784216
Alignment:
| Q |
269 |
tattagagttggattatgtagataaataatttgttttagaatagataaagtataat |
324 |
Q |
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| T |
25784271 |
tattagagttggattatgtagataaataatttgttttggaatagataaagtataat |
25784216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 22 - 213
Target Start/End: Complemental strand, 55683523 - 55683335
Alignment:
| Q |
22 |
tatttatgatgaaaataaaatgaattgatacagatacaacaatataacatgagagacatttacatacactttaggtggacaacgtgaaagtctattggct |
121 |
Q |
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| T |
55683523 |
tatttctgattaaaataaaatgaagtaatacaaatacaacaatataacatgggaaacatttacatacacttcaggtggggaacgtgaaagtccatcagct |
55683424 |
T |
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| Q |
122 |
gtgatgtcatgtaaccttcatcgatacatgatgtattcaaacttttcttgaattgaaactggaccatccggtaggcctaaccaattcagtgt |
213 |
Q |
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| T |
55683423 |
ttaatgtcatataacct---tccatacataatatattcaaacttttcttgaattgaaacagggccatcctggaggcaaaaccaatttagtgt |
55683335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 55681625 - 55681564
Alignment:
| Q |
235 |
ggtccgcaaacgatcaagcggataataaa-gcatatattagagttggattatgtagataaat |
295 |
Q |
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| T |
55681625 |
ggtccgcaaaagatcaagtggataataaaagcatatattagggttgaactatgtagataaat |
55681564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 34015579 - 34015376
Alignment:
| Q |
7 |
tacattactaggtgatatttatgatgaaaataaaatgaattgatacagatacaacaatataacatgagagacatttacatacactttaggtggacaacgt |
106 |
Q |
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| T |
34015579 |
tacattccttggtgatatttctgattaaaataaaatgaagtaatacaaatacaacaatataacatgggaagcatttacatacacttcaggtggggaacgt |
34015480 |
T |
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| Q |
107 |
gaaagtctattggctgtgatgtcatgtaaccttcatcgatacatgatgtattcaaacttttcttgaattgaaactggaccatccggtaggcctaaccaat |
206 |
Q |
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| T |
34015479 |
gaaagtccatcagctttaatgtcatataa---tcttccatacatgatatattcgaacttctcttgaattgaaacagggccatcctggaggcaaaaccaat |
34015383 |
T |
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| Q |
207 |
tcagtgt |
213 |
Q |
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| T |
34015382 |
ttagtgt |
34015376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 34010408 - 34010489
Alignment:
| Q |
215 |
aagaacggttttattggataggtccgcaaacgatcaagcggataataaa-gcatatattagagttggattatgtagataaat |
295 |
Q |
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||||| |||||||| | || |||||||||| ||||||| |||||||||| ||||||||||| |||| | | ||||||||||| |
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| T |
34010408 |
aagaatggttttatggaatgggtccgcaaaagatcaagtggataataaaagcatatattagggttgaactctgtagataaat |
34010489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 34014442 - 34014361
Alignment:
| Q |
215 |
aagaacggttttattggataggtccgcaaacgatcaagcggataataaa-gcatatattagagttggattatgtagataaat |
295 |
Q |
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| T |
34014442 |
aagaatggttttatggaatgggtccgcaaaagatcaagtggataataaaagcatatattagggttgaactctgtagataaat |
34014361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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